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Job DescriptionP00634
Confidence100.00%DateWed Jan 25 15:20:09 GMT 2012
Rank7Aligned Residues363
% Identity34%Templatec3e2dB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase
Resolution1.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90.. .......100. ........110.........120.........130...
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Query Sequence  KPAKNIILLIGDGMGDSEITAARNYAEGAGG. . . . . FFKGIDALP. . . LTGQYTHYALNKKTGKPDYVTDSAASATAWST
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Template Sequence  AEIKNVILMIGDGMGPQQVGLLETYANQAPNSIYKGNKTAIYQLAQEGVIGSSLTHPED. . . . . . AIVVDSACSATMLAT
Template Known Secondary structure 






TT
TTTT


S


TT......SSS

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   1........10.........20.........30.........40.........50......... 60.........70....
 
   134.....140.........150.........160.........170.........180.........190.........200.........210...
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Query Sequence  GVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSI
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Template Sequence  GIYSSSEVIGIDSQGNHVETVLEKAKKAGKATGLVSDTRLTHATPASFAAHQPHRSLENQ. . . . . . . . . . . . . . . . . . . I
Template Known Secondary structure  SS


TT
BSB
TTS
B


TT
TTSTTT

BS
TT
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   75....80.........90.........100.........110.........120.........130.... .
 
   214.....220.........230........ .240.........250.........260.........270..
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Query Sequence  TEQLLNARADVTLGGGAKTFAETAT. . . . . . . . . . . . . . . . . . . . . AGEWQGKTLREQAQARGYQLVSDAASLNSVTEAN
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Template Sequence  ASDMLATGADVMLSGGLRHWIPKSTNDKGETYKQLEKLTQGDVYLKSKRKDDRNLLTEAEKDGYQLAFNRNMLDDA. . . .
Template Known Secondary structure  T
S
GGGSS
GGGGGTSTTT
S





SS


TT
SS
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   136...140.........150.........160.........170.........180.........190.........200.........210.
 
   273......280.........290.........300.........310.........320.........330.........340.........350..
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Query Sequence  QQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQD
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Template Sequence  KGDKLLGLFAYSGMDDGIAYSNKKK. . . . . . . . . . . . . . . SGERTQPSLKEMTQKALNILSKDEDGFFLMVEGGQIDWAG
Template Known Secondary structure 
SS

SSSS


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S

TT
TT

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   212.......220.........230...... ...240.........250.........260.........270......
 
   353......360.........370.........380.........390.........400.........410.........420..
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Query Sequence  HAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVM. . . . . . . . . .
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Template Sequence  HSNDAGTMLHELLKFDEAIQTVYEWAKDREDTIVIVTADHETGSFGFSYSSNDLPKPQKRSGEAFADRDYAPNFNFGAFD
Template Known Secondary structure  TT
TT
SSS



BSSS



B

SSGGGSSS
B

SSB


T
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   277..280.........290.........300.........310.........320.........330.........340.........350......
 
  
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Template Sequence  ILDGLYNQKQSYYGMISEFQKLDKSLQTPEKLAEIVNKNSEFPITAEQAKNVLASKPNPYRLAQHKYLSAEEVPAINDFD
Template Known Secondary structure  T

S
TS
GGG


SS




TT

TT
TTT

S

SSSG
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   357..360.........370.........380.........390.........400.........410.........420.........430......
 
   423......430.........440.........450 .........460........
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Query Sequence  . . . . . . . . . . . . . . . . . SYGNSEEDSQEHTGSQLRIAAYGPHAAN. . VVGLTDQTDLFYTMKAAL
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Template Sequence  AFFPYNDRGNLLAREQATGQNIVWGTGTHTHTPVNVFAWGPAEKILPVSKIMHHSELGEYIKQQV
Template Known Secondary structure  GG

S

TT


SS


S
GGGSST
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   437..440.........450.........460.........470.........480.........490.........500.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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