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Job DescriptionP00634
Confidence98.16%DateWed Jan 25 15:20:09 GMT 2012
Rank33Aligned Residues262
% Identity22%Templatec2gsoB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   64.....70.........80.........90.........100.........110.........120.........130.... ....
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Query Sequence  AKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTG. . . . . VKTY
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Template Sequence  PHALLLISIDGLRADML. . . . . . . . . DRGITPNLSHLAREGVRARWMAP. . . . . . SYPSLTFPNHYTLVTGLRPDHHGIV
Template Known Secondary structure 

TT

GGGG.........SSSS
SS

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SS
S


S

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   45....50.........60. ........70.........80.... .....90.........100.........
 
   139140.........150.. .......160.........170.........180.........190.........200...
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Query Sequence  NGALGVDIHEKDHP. . . . . . . . . . . . . . . TILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGN
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Template Sequence  HNSMRDPTLGGFWLSKSEAVGDARWWGGEPVWVGVENTGQHAATWSWPGS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SSSTTT
TT
T
GGG

S

TT
SS
TTT..............................
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   110.........120.........130.........140.........150.........
 
   204.....210.........220.........230.........240.........250.........260.........270.........280...
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Query Sequence  ALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFAD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   284.....290.........300.........310.........320.........330.... .....340.........350.... .....
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Query Sequence  GNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSK. . NEKGFFLQVEGASIDKQDHA. . ANPCG
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Template Sequence  . . . . . . . . . . . . . . . . . EAAIKGVRPSQWRHYQKGVRLDTRVDAVRGWLATDGAQRNRLVTLYFEHVDEAGHDHGPESRQ
Template Known Secondary structure  .................TS
BTTB

SB




TT



GGG


TTS
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   160.........170.........180.........190.........200.........210.........220..
 
   360.........370.........380.. .......390.....
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Query Sequence  QIGETVDLDEAVQRALEFAKKEG. . . NTLVIVTADHAHA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                     
                                            
Template Sequence  YADAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGMAEVAPGHAISVEDIAPPQIATAITDGQVIGFEPLPGQQAAAE
Template Known Secondary structure  T
GGG
S



TT
S
TTT


BS
TT
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   223......230.........240.........250.........260.........270.........280.........290.........300..
 
   396...400.........410.........420.........430.........440...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAA
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Template Sequence  ASVLGAHDHYDCWRKAELPARWQYGSHPRIPSLVCQMHEGWDALFPDKLAKRAQRGTRGSHGYDPALPSMR. . . . AVFLA
Template Known Secondary structure  STTGGGS
GGG

S
STTS
S
TT

S


S


S
TTSGGG
....B
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   303......310.........320.........330.........340.........350.........360.........370... .....
 
   444... ..450.........460.........470.
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Query Sequence  YGPH. . AANVVGLTDQTDLFYTMKAALGLK
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Template Sequence  QGPDLAQGKTLPGFDNVDVYALMSRLLGIP
Template Known Secondary structure  STTB
SS

GGGTT

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   379380.........390.........400........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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