Phyre 2 alignment of P27828 with d1iira

Job Description P27828
Confidence 99.82% Date Thu Jan 5 11:44:04 GMT 2012

Rank 37 Aligned Residues 356

% Identity 12% Template d1iira_

SCOP info UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase Gtf glycosyltransferase

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure								.																																							.
Query SS confidence								.																																							.
Query Sequence	M	K	V	L	T	V	F	.	G	T	R	P	E	A	I	K	M	A	P	L	V	H	A	L	A	K	D	P	F	F	E	A	K	V	C	V	T	A	Q	H	R	E	M	L	D	Q	.	V	L	K	L	F	S	I	V	P	D	Y	D	L	N	I	M	Q	P	G	Q	G	L	T	E	I	T	C	R	I	L	E	G	L
Query Conservation								.																																							.
Alig confidence								.																				.																			.
Template Conservation																												.
Template Sequence	M	R	V	L	L	A	T	C	G	S	R	G	D	T	E	P	L	V	A	L	A	V	R	V	R	D	L	.	G	A	D	V	R	M	C	A	P	P	D	C	A	E	R	L	A	E	V	G	V	P	H	V	P	V	G	P	R	A	K	P	L	T	A	E	D	V	R	R	F	T	T	E	A	I	A	T	Q	F	D	E
Template Known Secondary structure									S																		T	.	T									G	G	G							T	T											S
Template Predicted Secondary structure																												.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	P	I	L	A	E	F	K	P	D	V	V	L	V	H	G	D	T	T	T	T	L	A	T	S	L	A	A	F	Y	Q	R	I	P	V	G	H	V	E	A	G	L	R	T	G	D	L	Y	S	P	W	P	E	E	A	N	R	T	L	T	G	H	L	A	M	Y	H	F	S	P	T	E	T	S	R	Q	N	L	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	I	P	A	A	A	E	G	C	A	A	V	V	T	T	G	L	L	A	A	A	I	G	V	R	S	V	A	E	K	L	G	I	P	Y	F	Y	A	F	H	C	P	S	Y	V	P	S	P	Y	Y	P	P	P	P	I	D	I	P	A	Q	W	E	R	N	N	Q	S	A	Y	Q	R	Y	G	G	L	L	N	S	H	R	D
Template Known Secondary structure					T	T	T		S						S																T								S	S	G	G	G	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
	87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.														210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	N	V	A	D	S	R	I	F	I	T	G	N	T	V	I	D	A	L	L	W	V	R	D	Q	V	M	S	S	D	K	L	R	S	E	L	A	A	N	Y	P	F	I	D	P	D	K	K	M	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	G	H	R	R	E	S	F	G	R	G	F	E	E	I
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	I	G	L	P	P	V	E	D	I	F	T	F	G	Y	T	D	H	P	W	V	A	A	D	P	V	L	A	P	L	Q	P	T	D	L	D	A	V	Q	T	G	A	W	I	L	P	D	E	R	P	L	S	P	E	L	A	A	F	L	D	A	G	P	P	P	V	Y	L	G	F	G	A	P	A	D	A	V	R	V	A
Template Known Secondary structure		T	T														S	S					S		T	T	T	S						S	S																										T	S	S
Template Predicted Secondary structure
Template SS confidence
	176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

	226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	C	H	A	L	A	D	I	A	T	T	H	Q	D	I	Q	I	V	Y	P	V	H	L	N	P	N	V	R	E	P	V	N	R	I	L	G	H	V	K	N	V	I	L	I	D	P	Q	E	Y	L	P	F	V	W	L	M	N	H	A	W	L	I	L	T	D	S	G	G	I	Q	E	E	A	P	S	L	G	K	P	V	L
Query Conservation
Alig confidence								.	.	.																	.	.	.	.	.	.	.	.																		.	.
Template Conservation								.	.	.																	.	.	.	.	.	.	.	.																		.	.
Template Sequence	I	D	A	I	R	A	H	.	.	.	G	R	R	V	I	L	S	R	G	W	A	D	L	V	L	P	.	.	.	.	.	.	.	.	D	D	G	A	D	C	F	A	I	G	E	V	N	H	Q	V	L	.	.	F	G	R	V	A	A	V	I	H	H	G	G	A	G	T	T	H	V	A	A	R	A	G	A	P	Q	I
Template Known Secondary structure							T	.	.	.	T							T	T		T	T				S	.	.	.	.	.	.	.	.	S		G	G	G					S	S							.	.	G	G	G	S	S																		T
Template Predicted Secondary structure								.	.	.																	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
	259	260	.	.	.	.	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.									.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

	306	.	.	.	310	.					.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure							.	.	.	.																	.	.	.
Query SS confidence							.	.	.	.																	.	.	.
Query Sequence	V	M	R	D	T	T	.	.	.	.	E	R	P	E	A	V	T	A	G	T	V	R	L	V	G	T	.	.	.	D	K	Q	R	I	V	E	E	V	T	R	L	L	K	D	E	N	E	Y	Q	A	M	S	R	A	H	N	P	Y	G	D	G	Q	A	C	S	R	I	L	E	A	L	K	N
Query Conservation							.	.	.	.																	.	.	.
Alig confidence							.	.	.	.																	.	.	.														.
Template Conservation																																											.
Template Sequence	L	L	P	Q	M	A	D	Q	P	Y	Y	A	G	R	V	A	E	L	G	V	G	V	A	H	D	G	P	I	P	T	F	D	S	L	S	A	A	L	A	T	A	L	.	T	P	E	T	H	A	R	A	T	A	V	A	G	T	I	R	T	D	G	A	A	V	A	A	R	L	L	L	D	A
Template Known Secondary structure					S	T	T												T	S					S	S	S	S														T	.	S														S		S
Template Predicted Secondary structure																																											.
Template SS confidence
	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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