Job Description P27828 Confidence 100.00% Date Thu Jan 5 11:44:04 GMT 2012 Rank 8 Aligned Residues 367 % Identity 12% Template c3s29C_ PDB info PDB header:transferase Chain: C: PDB Molecule:sucrose synthase 1; PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications. Resolution 2.85 Å

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		2	.	.	.	.	.												.	.	10	.	.	.	.	.					.	.	.	.	20	.	.	.	.	.												.	.	.	.	30	.	.	.	.	.	.							.	.	.	40	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query Sequence		K	V	L	T	V	F	.	.	.	.	.	.	.	.	.	.	.	G	T	R	P	E	A	I	K	.	.	.	.	M	A	P	L	V	H	A	L	A	K	.	.	.	.	.	.	.	.	.	.	.	D	P	F	F	E	A	K	V	C	V	T	.	.	.	.	.	.	A	Q	H	R	E	M	L	D	Q	V	L	K	L
Query Conservation								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.			.						.	.	.	.											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation																					.
Template Sequence		N	V	V	I	L	S	P	H	G	Y	F	A	Q	D	N	V	L	G	Y	.	P	D	T	G	G	Q	V	V	Y	I	L	D	Q	V	R	A	L	E	I	E	M	L	Q	R	I	K	Q	Q	G	L	N	I	K	P	R	I	L	I	L	T	R	L	L	P	D	A	V	G	T	T	C	G	E	R	L	E	R	V	Y	D
Template Known Secondary structure									S	S				S	S	S		T	T	S	.	T	T		S																								T	T															T	T			S	S	S	T	T	S	S					T	T
Template Predicted Secondary structure																					.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		50	.	.	.	.	.	.	.	.	.	60	.	.													.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	I	V	P	D	Y	D	L	N	I	M	Q	.	.	.	.	.	.	.	.	.	.	.	.	P	G	Q	G	L	T	E	I	T	C	R	I	L	E	G	L	K	P	I	L	A	E	F	K	P	D	V	V	L	V	H	G	D	T	T	T	T	L	A	T	S	L	A	A	F	Y	Q	R	I	P	V	G	H	V	E
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation																																																											.
Template Sequence		S	E	Y	C	D	I	L	R	V	P	F	R	T	E	K	G	I	V	R	K	W	I	S	R	F	E	V	W	P	Y	L	E	T	Y	T	E	D	A	A	V	E	L	S	K	E	L	N	G	K	P	D	L	I	I	G	N	Y	.	S	D	G	N	L	V	A	S	L	L	A	H	K	L	G	V	T	Q	C	T	I	A
Template Known Secondary structure			S	S											T	T					S				G	G	G		G	G	G																	S	S			S							.															T
Template Predicted Secondary structure																																																											.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.		.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		118	.														120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.																							.	.	.	.	.	160	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	T	G	D	L	Y	S	P	W	P	E	E	A	N	R	T	L	T	G	H	L	A	M	Y	H	F	S	P	T	E	T	S	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	L	R	E	N	V	A
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	A	L	E	K	T	K	Y	P	D	S	D	I	Y	W	K	K	L	D	D	K	Y	H	F	S	C	Q	F	T	A	D	I	F	A	M	N	H	T	D	F	I	I	T	S	T	F	Q	E	I	A	G	S	K	E	T	V	G	Q	Y	E	S	H	T	A	F	T	L	P	G	L	Y	R	V	V	H	G	I	D	V	F
Template Known Secondary structure		S							S	T	T	T	T	T	T																								S	S					S		S							S	S	S			T	T	G	G	G	S	S				T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.											.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	R	I	F	I	T	G	N	T	V	I	D	A	L	L	W	V	R	D	Q	V	M	S	S	D	K	L	R	S	E	L	A	A	N	Y	.	.	.	.	.	.	.	.	.	.	P	F	I	D	P	D	K	K	M	I	L	V	T	G	H	R	R	E	S	F	G	R	G	F	E	E	I	C	H	A	L	A	D	I
Query Conservation																																						.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	K	F	N	I	V	S	P	G	A	D	M	S	I	Y	F	P	Y	T	E	E	K	R	R	L	T	K	F	H	S	E	I	E	E	L	L	Y	S	D	V	E	N	K	E	H	L	C	V	L	K	D	K	K	K	P	I	L	F	T	M	A	R	L	D	R	V	K	N	L	S	G	L	V	E	W	Y	G	K	N
Template Known Secondary structure			T	T										T	T	T				T	T		T	T	T	S		G	G	G											S			S	S	S			S		B	S		T	T	S										S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.													250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.										.	.	.	.	.	.	290
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.																					.															.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.																					.															.	.	.	.	.	.	.	.	.
Query Sequence		A	T	T	H	Q	D	I	Q	I	V	Y	P	V	H	L	N	P	.	.	.	.	.	.	.	.	.	.	.	.	N	V	R	E	P	V	N	R	I	L	G	H	V	K	N	V	I	L	I	D	.	P	Q	E	Y	L	P	F	V	W	L	M	N	H	A	.	.	.	.	.	.	.	.	.	W	L	I	L	T	D	S
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.																					.															.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.																					.															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	L	R	E	L	A	N	L	V	V	V	G	G	D	R	R	K	E	S	K	D	N	E	E	K	A	E	M	K	K	M	Y	D	L	I	E	E	Y	K	L	N	G	Q	F	R	W	I	S	S	Q	M	D	R	V	R	N	G	E	L	Y	R	Y	I	C	D	T	K	G	A	F	V	Q	P	A	L	Y	E	A	F
Template Known Secondary structure																	T	T	S																					T	T		T	B	T																							T	T								S		B	S	S
Template Predicted Secondary structure
Template SS confidence
		598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340					.	.	.	.	.	.	.	.	.	350	.	.	.	.	.						.	.	.	.	360
Predicted Secondary structure																																					.																.	.	.	.																.	.	.	.	.
Query SS confidence																																					.																.	.	.	.																.	.	.	.	.
Query Sequence		G	G	I	Q	E	E	A	P	S	L	G	K	P	V	L	V	M	R	D	T	T	E	R	P	E	A	V	T	A	G	T	V	R	L	V	.	G	T	D	K	Q	R	I	V	E	E	V	T	R	L	L	.	.	.	.	K	D	E	N	E	Y	Q	A	M	S	R	A	H	N	P	.	.	.	.	.	Y	G	D	G	Q
Query Conservation																																					.																.	.	.	.																.	.	.	.	.
Alig confidence																																					.																.	.	.	.																.	.	.	.	.
Template Conservation
Template Sequence		G	L	T	V	V	E	A	M	T	C	G	L	P	T	F	A	T	C	K	G	G	P	A	E	I	I	V	H	G	K	S	G	F	H	I	D	P	Y	H	G	D	Q	A	A	D	T	L	A	D	F	F	T	K	C	K	E	D	P	S	H	W	D	E	I	S	K	G	G	L	Q	R	I	E	E	K	Y	T	W	Q	I
Template Known Secondary structure												T							S	S	B	T							B	T	T	T	B					T	T	S																			T
Template Predicted Secondary structure
Template SS confidence
		678	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	S	R	I	L	E	A	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	S	Q	R	L	L	T	L	T	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		758	.	760	.	.	.	.	.	.	.