Job Description P27828 Confidence 99.97% Date Thu Jan 5 11:44:04 GMT 2012 Rank 17 Aligned Residues 356 % Identity 16% Template c2x6rA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		M	K	V	L	T	V	F	G	T	R	P	E	A	I	K	M	A	P	L	V	H	A	L	A	K	.	.	.	D	P	F	F	E	A	K	V	C	V	T	A	Q	H	R	E	M	L	D	Q	V	L	K	L	F	S	I	V	P	D	Y	D	L	N	I	M	Q	P	G	Q	G	L	T	E	I	T	C	R	I	L	E	G
Query Conservation																											.	.	.
Alig confidence											.																.	.	.																													.	.
Template Conservation											.																																															.	.
Template Sequence		R	S	F	V	H	V	N	S	T	.	S	F	G	G	G	V	A	E	I	L	H	S	L	V	P	L	L	R	S	I	G	I	E	A	R	W	F	V	I	E	G	P	T	E	F	F	N	V	T	K	T	F	H	N	A	L	.	.	Q	G	N	E	S	L	K	L	T	E	E	M	K	E	L	Y	L	N	V	N	R	E
Template Known Secondary structure									S		.	S	S	S	S	T														T	T	T																										.	.		T		S	S
Template Predicted Secondary structure											.																																															.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	P	I	L	A	E	F	K	P	D	V	V	L	V	H	G	D	T	T	T	T	L	A	T	S	L	A	A	F	Y	Q	R	I	P	V	G	H	V	E	A	G	L	R	T	G	D	L	Y	S	P	W	P	E	E	A	N	R	T	L	T	G	H	L	A	M	Y	H	F	S	P	T	E	T	S	R	Q	N	L	L
Query Conservation
Alig confidence																														.	.	.													.	.																																	.	.	.
Template Conservation																														.	.	.													.	.																																	.	.	.
Template Sequence		N	S	K	F	I	D	L	S	S	F	D	Y	V	L	V	H	D	P	Q	P	A	A	L	I	E	F	Y	E	.	.	.	K	K	S	P	W	L	W	R	C	H	I	D	.	.	L	S	S	P	N	R	E	F	W	E	F	L	R	R	F	V	E	K	Y	D	R	Y	I	F	H	L	P	E	Y	V	Q	P	.	.	.
Template Known Secondary structure			T	T	S	S		G	G	G	S	S						S	S	T	T	G	G	G	G	G	G	S		.	.	.			S								S		.	.		S	S														T	T	S	S					S	S	G	G	G	S		T	.	.	.
Template Predicted Secondary structure																														.	.	.													.	.																																	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	N	V	A	D	S	R	I	F	I	T	G	N	T	V	I	D	A	L	L	W	V	R	D	Q	V	M	S	S	D	K	L	R	S	E	L	A	A	N	Y	P	F	I	D	P	D	K	K	M	I	L	V	T	G	H	R	R	E	S	F	G	R	G	F	E	E	I	C	H	A	L	A	D	I	A	T	T	H	Q
Query Conservation
Alig confidence		.	.																								.	.	.	.	.	.
Template Conservation		.	.																								.	.	.	.	.	.
Template Sequence		.	.	E	L	D	R	N	K	A	V	I	M	P	P	S	I	D	P	L	S	E	K	N	V	E	.	.	.	.	.	.	L	K	Q	T	E	I	L	R	I	L	E	R	F	D	V	D	P	E	K	P	I	I	T	Q	V	S	R	F	D	P	W	K	G	I	F	D	V	I	E	I	Y	R	K	V	K	E	K	I	P
Template Known Secondary structure		.	.	T	S		T	T	T								B		T	T	S	T	T	T	S		.	.	.	.	.	.													T	T			T	T	S										S	T	T	S														T	T		T
Template Predicted Secondary structure		.	.																								.	.	.	.	.	.
Template SS confidence
				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.							.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		238	.	240	.	.	.	.	.	.	.	.										.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.						.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Query Sequence		D	I	Q	I	V	Y	P	V	H	L	N	.	.	.	.	.	.	.	.	.	P	N	V	R	E	P	V	N	R	I	L	G	H	V	K	N	V	I	L	I	D	P	Q	E	Y	L	P	F	V	W	L	M	N	H	A	W	L	I	L	.	.	.	.	.	T	D	S	G	G	I	Q	E	E	A	P	S	L	G	K	P
Query Conservation													.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Template Conservation
Template Sequence		G	V	Q	L	L	L	V	G	V	M	A	H	D	D	P	E	G	W	I	Y	F	E	K	T	L	R	K	I	G	E	D	Y	D	V	K	V	L	T	N	L	I	G	V	H	A	R	E	V	N	A	F	Q	R	A	S	D	V	I	L	Q	M	S	I	R	E	G	F	G	L	T	V	T	E	A	M	W	K	G	K	P
Template Known Secondary structure		T											T	T																T	T		T	T						G	G	G	T														S							S	S		S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		V	L	V	M	R	D	T	T	E	R	P	E	A	V	T	A	G	T	V	R	L	V	G	T	D	K	Q	R	I	V	E	E	V	T	R	L	L	K	D	E	N	E	Y	Q	A	M	S	R	A	H	N	P	Y	G	.	D	G	Q	A	C	S	R	I	L	E	A	L	K	N	N	R	I	S	L
Query Conservation																																																								.
Alig confidence																									.																															.
Template Conservation																									.
Template Sequence		V	I	G	R	A	V	G	G	I	K	F	Q	I	V	D	G	E	T	G	F	L	V	R	.	D	A	N	E	A	V	E	V	V	L	Y	L	L	K	H	P	E	V	S	K	E	M	G	A	K	A	K	E	R	V	R	K	N	F	I	I	T	K	H	M	E	R	Y	L	D	I	L	N	S	L
Template Known Secondary structure						S										B	T	T	T					S	.	S																																	T	B														T
Template Predicted Secondary structure																									.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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