Job Description P27828 Confidence 99.74% Date Thu Jan 5 11:44:04 GMT 2012 Rank 40 Aligned Residues 330 % Identity 12% Template c2vsnB_ PDB info PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation Resolution 2.75 Å

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		2	.	.	.	.	.				.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		K	V	L	T	V	F	.	.	.	G	T	R	P	E	A	I	K	M	A	P	L	V	H	A	L	A	K	D	P	F	F	E	A	K	V	C	V	T	A	Q	H	R	E	M	L	D	Q	V	L	K	L	F	S	I	V	P	D	Y	D	L	N	I	M	Q	P	G	Q	G	L	T	E	I	T	C	R	I	L	E	G	L
Query Conservation								.	.	.
Alig confidence								.	.	.																				.																																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.																																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	G	F	V	S	N	G	F	G	A	H	P	T	G	L	L	T	V	A	L	F	E	A	L	Q	R	R	.	Q	P	D	L	Q	M	H	L	F	A	T	S	G	D	D	G	S	T	L	R	T	R	L	A	Q	A	S	T	L	H	D	V	T	A	L	G	.	.	.	.	.	.	.	.	.	.	.	H	L	A	T
Template Known Secondary structure								S		S	S	S	S																	.		T	T								S	S				S									T	T	S						T	T	S		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.																																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270												.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	I	L	A	E	F	K	P	D	V	V	L	V	H	G	D	T	T	T	T	L	A	T	S	L	A	A	F	Y	Q	R	I	P	V	G	H	V	E	A	G	L	R	T	G	D	L	Y	S	P	W	P	E	E	A	N	R	T	L	T	G	H	L	A	M	Y	H	F	S	P	T	E	T	S	R	Q	N	L	L	R
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	H	I	R	H	H	G	I	D	L	L	F	D	L	A	G	W	G	G	G	G	R	P	E	V	F	A	L	R	P	A	P	V	Q	V	N	W	L	A	Y	P	G	T	S	G	A	P	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	D	Y	V	L	G	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T		S					S	S		S	S	S	S								T			S	S						S	S	S	S	S					T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.															.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	V	A	D	S	R	I	F	I	T	G	N	T	V	I	D	A	L	L	W	V	R	D	Q	V	M	S	S	D	K	L	R	S	E	L	A	A	N	Y	P	F	I	D	P	D	K	K	M	I	L	V	T	G	H	R	R	E	S	F	G	R	G	F	E	E	I	C	H	A	L	A	D	I	A	T	T	H	Q	D
Query Conservation
Alig confidence		.																																																										.	.
Template Conservation		.																																																										.	.
Template Sequence		.	D	A	F	A	L	P	P	A	L	E	P	F	Y	S	E	H	V	L	R	L	Q	G	A	F	Q	P	S	D	T	S	R	V	V	A	E	P	P	S	R	T	Q	C	G	L	P	E	Q	G	V	V	L	C	C	F	N	N	S	.	.	Y	K	L	N	P	Q	S	M	A	R	M	L	A	V	L	R	E	V	P	D
Template Known Secondary structure		.		T	T	T	S		G	G	G	G	G	G		S	S						S	S		S					T	T									T	G	G	G	T			S	S	S									G	.	.	G	G																S	T	T
Template Predicted Secondary structure		.																																																										.	.
Template SS confidence
			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.			.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		239	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure							.	.																				.																										.	.	.	.
Query SS confidence							.	.																				.																										.	.	.	.
Query Sequence		I	Q	I	V	Y	.	.	P	V	H	L	N	P	N	V	R	E	P	V	N	R	I	L	G	H	V	.	K	N	V	I	L	I	D	P	Q	E	Y	L	P	F	V	W	L	M	N	H	A	W	L	I	L	.	.	.	.	T	D	S	G	G	I	Q	E	E	A	P	S	L	G	K	P	V	L	V	M	R	D	T	T
Query Conservation							.	.																				.																										.	.	.	.
Alig confidence							.	.																				.																										.	.	.	.
Template Conservation
Template Sequence		S	V	L	W	L	L	S	G	P	G	E	A	D	A	R	L	R	A	F	A	H	A	Q	G	V	D	A	Q	R	L	V	F	M	P	K	L	P	H	P	Q	Y	L	A	R	Y	R	H	A	D	L	F	L	D	T	H	P	Y	N	A	H	T	T	A	S	D	A	L	W	T	G	C	P	V	L	T	T	P	G	E	T
Template Known Secondary structure										S	T	T												T	T	S		G	G	G																G	G	G		S						S	S	S			S										T					B				S	S
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		312	.	.						.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.				360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure					.	.	.	.	.																																														.	.	.
Query SS confidence					.	.	.	.	.																																														.	.	.
Query Sequence		E	R	P	.	.	.	.	.	E	A	V	T	A	G	T	V	R	L	V	G	T	D	K	Q	R	I	V	E	E	V	T	R	L	L	K	D	E	N	E	Y	Q	A	M	S	R	A	H	N	P	Y	G	D	G	.	.	.	Q	A	C	S	R	I	L	E	A	L	K	N
Query Conservation					.	.	.	.	.																																														.	.	.
Alig confidence					.	.	.	.	.																																														.	.	.
Template Conservation
Template Sequence		F	A	A	R	V	A	G	S	L	N	H	H	L	G	L	D	E	M	N	V	A	D	D	A	A	F	V	A	K	A	V	A	L	A	S	D	P	A	A	L	T	A	L	H	A	R	V	D	V	L	R	R	A	S	G	V	F	H	M	D	G	F	A	D	D	F	G	A
Template Known Secondary structure		G	G	G	S										T		G	G	G	B		S	S																																S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions