Job Description P27828 Confidence 99.90% Date Thu Jan 5 11:44:04 GMT 2012 Rank 30 Aligned Residues 304 % Identity 15% Template c2iv3B_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycosyltransferase; PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis Resolution 2.3 Å

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		1	.	.	.	.	.	.	.	.	10														.	.	.	.	.					.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Query Sequence		M	K	V	L	T	V	F	G	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	A	I	K	.	.	.	.	M	A	P	L	V	H	A	L	A	K	D	P	F	F	E	A	K	V	C	V	T	A	Q	H	R	E	M	L	D	Q	V	L	K	L	F	S	I	V	P	D	Y	D	L	N	I	M	Q	P
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.												.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	V	A	L	V	N	I	P	L	R	V	P	G	S	D	A	W	I	S	V	P	P	Q	G	Y	G	G	I	Q	W	V	V	A	N	L	M	D	G	L	L	E	L	.	G	H	E	V	F	L	L	G	A	P	S	P	G	R	P	G	L	T	V	V	P	A	G	E	P	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												B		T	T	S	S	S	B			S	S		S	S	S																	T	.	T							S							T	T					S			S		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	G	L	T	E	I	T	C	R	I	L	E	G	L	K	P	I	L	A	E	F	K	P	D	V	V	L	V	H	G	D	T	T	T	T	L	A	T	S	L	A	A	F	Y	Q	R	I	P	V	G	H	V	E	A	G	L	R	T	G	D	L	Y	S	P	W	P	E	E	A	N	R	T	L	T	G	H	L	A	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	E	E	I	E	R	W	L	R	T	A	D	V	D	V	V	H	D	H	S	G	G	V	I	G	P	A	.	.	.	.	G	L	P	P	G	T	A	F	I	S	S	H	H	F	T	T	R	P	V	N	P	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.													S						S	S	S	S	S		S	T	.	.	.	.	T			T	T									S	S	S			S			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	F	S	P	T	E	T	S	R	Q	N	L	L	R	E	N	V	A	D	S	R	I	F	I	T	G	N	T	V	I	D	A	L	L	W	V	R	D	Q	V	M	S	S	D	K	L	R	S	E	L	A	A	N	Y	P	F	I	D	P	D	K	K	M	I	L	V	T	G	H	R	R	E	S	F	G	R	G	F	E
Query Conservation
Alig confidence		.													.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.													.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	C	T	Y	S	S	R	A	Q	R	A	H	C	.	.	.	.	G	G	G	D	D	A	P	V	I	P	I	P	V	D	P	A	R	Y	R	S	A	A	D	Q	V	A	K	E	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	F	M	G	R	V	S	P	H	K	G	A	L
Template Known Secondary structure		.				S									.	.	.	.	T			T	T	S		B					B		G	G	G	S			G	G	G						S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S			S	G	G	G	T
Template Predicted Secondary structure		.													.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			133	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																				.	.	.	.	.	180	.	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.						.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.
Query Sequence		E	I	C	H	A	L	A	D	I	A	T	T	H	Q	D	I	Q	I	V	Y	P	V	H	L	N	P	N	V	R	E	P	V	N	R	I	L	G	H	V	K	N	V	I	L	I	D	P	Q	E	Y	L	P	F	V	W	L	M	N	H	A	W	L	I	L	.	.	.	.	.	T	D	S	G	G	I	Q	E	E	A	P
Query Conservation																																																																		.	.	.	.	.
Alig confidence																																																																		.	.	.	.	.
Template Conservation
Template Sequence		E	A	A	A	F	A	H	A	C	G	R	R	L	V	L	A	G	P	A	W	E	P	E	Y	F	D	E	I	T	R	R	Y	G	S	T	V	E	P	I	G	E	V	G	G	E	R	R	L	D	L	L	A	S	A	H	A	V	L	A	M	S	Q	A	V	T	G	I	W	C	E	P	G	A	T	V	V	S	E	A	A
Template Known Secondary structure										T	T							S																T	T	T						S														S																	S
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		S	L	G	K	P	V	L	V	M	R	D	T	T	E	R	P	E	A	V	T	A	G	T	V	R	L	V	G	T	D	K	Q	R	I	V	E	E	V	T	R	L	L	K	D	E	N	E	Y	Q	A	M	S	R	A	H	.	N	P	Y	G	D	G	Q	A	C	S	R	I	L	E	A	L	K	N	N	R
Query Conservation																																																									.
Alig confidence											.													.																																	.
Template Conservation											.													.
Template Sequence		V	S	G	T	P	V	V	G	T	.	G	N	G	C	L	A	E	I	V	P	S	V	.	G	E	V	V	G	Y	G	T	D	F	A	P	D	E	A	R	R	T	L	A	G	L	P	A	S	D	E	V	R	R	A	A	V	R	L	W	G	H	V	T	I	A	E	R	Y	V	E	Q	Y	R	R	L	L
Template Known Secondary structure			T	T							.		S	T	T					G	G	G	T	.						S	S	S													T	S															B
Template Predicted Secondary structure											.													.
Template SS confidence
		273	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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