Job Description P27828 Confidence 24.54% Date Thu Jan 5 11:44:04 GMT 2012 Rank 449 Aligned Residues 136 % Identity 19% Template c1rcuB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein vt76; PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76 Resolution 2.50 Å

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		204	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure												.	.																																																													.	.	.	.	.	.	.	.
Query SS confidence												.	.																																																													.	.	.	.	.	.	.	.
Query Sequence		D	K	K	M	I	L	V	T	G	H	.	.	R	R	E	S	F	G	R	G	F	E	E	I	C	H	A	L	A	D	I	A	T	T	H	Q	D	I	Q	I	V	Y	P	V	H	L	N	P	N	V	R	E	P	V	N	R	I	L	G	H	V	K	N	V	I	L	I	D	P	Q	E	Y	.	.	.	.	.	.	.	.
Query Conservation												.	.																																																													.	.	.	.	.	.	.	.
Alig confidence												.	.																																																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	K	K	V	V	V	V	G	Y	S	G	P	V	N	K	S	P	V	S	E	L	R	D	I	C	L	E	L	G	R	T	L	A	K	K	G	Y	L	V	F	N	G	G	R	D	G	V	X	E	L	V	S	Q	G	V	R	E	A	G	G	T	V	V	G	I	L	P	D	E	E	A	G	N	P	Y	L	S	V	A	V
Template Known Secondary structure												S		T	T	S	T	T	T	G	G	G														T	T								S	S	T												T	T								S	T	T					T	T		S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
											274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.				.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.				.	.										.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																					.	.	.																													.	.	.			.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																					.	.	.																													.	.	.			.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	L	P	F	V	W	L	M	N	H	A	W	L	I	L	T	D	S	G	G	I	.	.	.	Q	E	E	A	P	S	L	G	K	P	V	L	V	M	R	D	T	T	E	R	P	E	A	V	T	A	G	T	.	.	.	V	R	.	.	.	.	.	.	.	.	.	L	V	G	T	D	K
Query Conservation		.	.	.	.	.	.	.	.	.																					.	.	.																													.	.	.			.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																					.	.	.																													.	.	.			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	G	L	D	F	Q	X	R	S	F	V	L	L	R	N	A	D	V	V	V	S	I	G	G	E	I	G	T	A	I	E	I	L	G	A	Y	A	L	G	K	P	V	I	L	L	R	G	T	G	G	W	T	D	R	I	S	Q	V	L	I	D	G	K	Y	L	D	N	R	R	I	V	E	I	H	Q	A	W	T	V
Template Known Secondary structure				S												T	T		S						S																T							T	T	S							G	G	G	G		B	T	T	T	B	S	S	T	T			S						S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	I	V	E	E	V	T	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	A	V	Q	I	I	E	Q	I
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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