 |
Job Description | P0A717 | Confidence | 24.13% | Date | Thu Jan 5 11:04:30 GMT 2012 |
Rank | 229 | Aligned Residues | 78 |
% Identity | 18% | Template | d1a1va2 |
SCOP info | P-loop containing nucleoside triphosphate hydrolases
| P-loop containing nucleoside triphosphate hydrolases
| RNA helicase
|
Resolution | 2.20 |
|
 |
  |   |
223 | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Query Sequence |   |
I | D | T | G | G | T | L | C | K | A | A | E | A | L | K | E | R | G | A | K | R | V | F | A | Y | A | T | H | P | I | F | S | G | N | A | A | N | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | R | N | S | V | I | D | E | V | V | V | C | D | T | I | P | L | S | D | E | I | K | S | L | P | N | V | R | T | L | . |
Query Conservation |   |
|   |
|
|
|
|
|   |   |
|
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |
|
|   |
|
|   |   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . |
|   |   |
|   |
|   |   |
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
| . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
  |   |
|
|   |   |   |   |   |
|
|   |   |
|   |   |   |
| . | . | . |   |   |   |   |   |
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|   |   |   |
|   |   |
|   |   |   |
|
|
|
|
|   |
|
|   |
|
|
|
|
|   |   |   |   |   |
|   |
|
|   |
Template Sequence |   |
C | H | S | K | K | K | C | D | E | L | A | A | K | L | V | A | L | G | . |
. |
. |
I | N | A | V | A | Y | Y | R | G | L | D | V | S | V | I | P | T | S | G | D | V | V | V | V | A | T | D | A | L | F | T | G | D | F | D | S | V | I | D | C | N | T | V | T | Q | T | V | D | F | S | L | D | P | T | F | T | I | E | T |
Template Known Secondary structure |   |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . | . |
|
|  |  |  |  |
| T | T | S |
| G | G | G | S |
| S | S | S | S |  |  |  |  |  |
| T | T |
|
|
|
|
| B | S |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
| S | S | S |
|  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
368 | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | |
|
|
. | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . |
  |
  |   |
|
291 | . | . | . | . | . | . | . | . | 300 | . | . | . |
Predicted Secondary structure |   |
. |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
T | L | S | G | M | L | A | E | A | I | R | R | I |
Query Conservation |   |
. |   |
|
|   |
|
|
|   |   |
|   |   |
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|   |   |   |   |   |
|
|   |
Template Sequence |   |
T | T | L | P | Q | D | A | V | S | R | T | Q | R | R |
Template Known Secondary structure |   |
 |
|
|
|
| B |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
449 | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|