Job Description P0A717 Confidence 100.00% Date Thu Jan 5 11:04:30 GMT 2012 Rank 5 Aligned Residues 285 % Identity 31% Template c3lpnB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: crystal structure of the phosphoribosylpyrophosphate (prpp) synthetase2 from thermoplasma volcanium in complex with an atp analog (ampcpp). Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	L	F	A	G	N	A	T	P	E	L	A	Q	R	I	A	N	R	L	Y	T	S	L	G	D	A	A	V	G	R	F	S	D	G	E	V	S	V	Q	I	N	E	N	V	R	G	G	D	I	F	I	I	Q	S	T	C	A	P	T	N	D	N	L	M	E	L	V	V	M	V	D	A	L	R	R	A	S	A	G
Query Conservation
Alig confidence																																																												.	.
Template Conservation																																																												.	.
Template Sequence		M	K	I	I	A	L	R	S	S	L	K	L	A	A	R	I	A	E	E	L	K	T	E	P	V	M	P	D	E	R	R	F	P	D	G	E	L	Y	L	R	Y	D	E	D	L	T	G	H	N	I	F	I	I	G	N	T	H	S	.	.	D	A	E	V	M	E	M	I	L	T	L	S	A	I	Q	D	Y	R	T	K
Template Known Secondary structure								G	G	G											T	T	S											T	T	S								S			T	T	S										S	.	.														G	G	G	S			S
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	T	A	V	I	P	Y	F	G	Y	A	R	Q	D	R	R	V	R	S	A	R	V	P	I	T	A	K	V	V	A	D	F	L	S	S	V	G	V	D	R	V	L	T	V	D	L	H	A	E	Q	I	Q	G	F	F	D	V	P	V	D	N	V	F	G	S	P	I	L	L	E	D	M	L	Q	L	N	L	D	N
Query Conservation
Alig confidence																								.														.																																					.	.
Template Conservation																								.														.																																					.	.
Template Sequence		S	V	N	I	I	A	P	Y	Y	G	Y	A	R	Q	H	Q	R	Y	K	N	G	E	.	P	I	S	S	Q	I	L	T	E	I	Y	S	S	.	Y	S	N	S	I	A	T	V	D	I	H	D	E	K	T	L	S	Y	S	K	V	K	F	S	D	L	H	A	N	D	A	I	V	R	Y	Y	.	.	K	N	V	D	V
Template Known Secondary structure								S	S		T	T	T	T			S		S	S	T	T		.														.	T		S						S		S	S	G	G	G	G	G	G		S	S																.	.	T	T	S
Template Predicted Secondary structure																								.														.																																					.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	V	V	S	P	D	I	G	G	V	V	R	A	R	A	I	A	K	L	L	N	D	T	D	M	A	I	I	D	K	R	R	P	R	A	N	V	S	Q	V	M	H	I	I	G	D	V	A	G	R	D	C	V	L	V	D	D	M	I	D	T	G	G	T	L	C	K	A	A	E	A	L	K	E	R	G	A	K	R
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		D	Y	V	V	S	P	D	D	G	G	L	A	R	V	A	D	I	S	A	K	L	G	.	K	K	H	F	F	I	E	K	K	R	I	D	D	R	T	V	E	M	K	V	P	N	V	D	V	N	G	K	K	L	L	I	V	D	D	I	I	S	T	G	G	T	I	A	K	S	S	G	L	L	R	E	K	G	A	S	K
Template Known Secondary structure		S					S	S	S	S	S												T	.												T	T								S					T	T											S	S														T	T		S
Template Predicted Secondary structure																								.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	A	Y	A	T	H	P	I	F	S	G	N	A	A	N	N	L	R	N	S	V	I	D	E	V	V	V	C	D	T	I	P	L	S	D	E	I	K	S	L	P	N	V	R	T	L	T	L	S	G	M	L	A	E	A	I	R	R	I	S
Query Conservation
Alig confidence																							.														.	.	.	.	.	.	.	.
Template Conservation																							.														.	.	.	.	.	.	.	.
Template Sequence		I	Y	V	S	A	V	H	G	L	F	V	N	G	S	E	N	K	I	L	Q	N	.	A	D	E	I	H	V	T	D	T	V	E	S	K	.	.	.	.	.	.	.	.	F	S	D	I	S	V	Y	Q	E	V	C	N	Y	I	R	D	I	D
Template Known Secondary structure													T	T							T	T	.		S						S	S	S		S	T	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																							.														.	.	.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.									.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions