 |
Job Description | P0A717 | Confidence | 98.68% | Date | Thu Jan 5 11:04:30 GMT 2012 |
Rank | 66 | Aligned Residues | 114 |
% Identity | 17% | Template | c3dmpD_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:uracil phosphoribosyltransferase; |
PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei
|
Resolution | 2.60 Å |
|
 |
  |   |
162 | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | |
. | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  | . |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | N | P | I | V | V | S | P | D | I | G | G | V | V | R | A | R | A | I | A | K | L | L | N | D | T | D | M | A | I | I | D | K | R | R | P | R | A | N | V | S | Q | V | . |
M | H | I | I | G | D | V | A | G | R | D | C | V | L | V | D | D | M | I | D | T | G | G | T | L | C | K | A | A | E | A | L | K | E | R | G |
Query Conservation |   |
  |   |   |
|
|
|
|
|
|   |
|   |   |   |
|
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   | . |   |   |   |   |
|
|
|   |
|
|   |
|
|
|
|
|
|
|
|   |
|
|
|
|
|   |   |
|
|   |   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
|
|
|
|
|
|   |
|   |   |
|   |   |   |   |   |
|   |
|   |
|
|   |
|   |
|   |
|
|
|   |   |   |   |   |   |
|
|   |
|
|
|   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
|
|   |
|   |   |   |
|
|   |   |
|   |   |   |
|
Template Sequence |   |
K | K | L | A | I | V | P | V | L | R | A | G | V | G | M | S | D | G | L | L | E | L | I | P | S | A | R | V | G | H | I | G | V | Y | R | A | D | D | H | R | P | V | E | Y | L | V | R | L | P | D | L | E | D | R | I | F | I | L | C | D | P | M | V | A | T | G | Y | S | A | A | H | A | I | D | V | L | K | R | R | G |
Template Known Secondary structure |   |
G | G |  |  |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  |  |
|  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |
|
|
|
| S | S |
|  |  |  |  |  |
| S |  |  | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
76 | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . |
  |
  |   |
241 | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | K | R | V | F | A | Y | A | T | H | P | I | F | S | G | N | A | A | N | N | L | R | N | S | V | I | D | E | V | V | V | C | D | T | I |
Query Conservation |   |
|   |   |
|   |   |   |   |
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |
|
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|   |   |
|   |   |
|
|
|   |   |
|
|   |   |
|   |   |   |   |
|   |
|   |
|   |
|
|   |
|
Template Sequence |   |
V | P | G | E | R | L | M | F | L | A | L | V | A | A | P | E | G | V | Q | V | F | Q | D | A | H | P | D | V | K | L | Y | V | A | S | L |
Template Known Secondary structure |   |
|
| G | G | G |  |  |  |  |
| S |  |  |
|  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  | S |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
156 | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|