Job Description P0A717 Confidence 62.12% Date Thu Jan 5 11:04:30 GMT 2012 Rank 102 Aligned Residues 119 % Identity 13% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.
Predicted Secondary structure																					.	.	.																																																				.	.	.
Query SS confidence																					.	.	.																																																				.	.	.
Query Sequence		L	L	E	D	M	L	Q	L	N	L	D	N	P	I	V	V	S	P	D	.	.	.	I	G	G	V	V	R	A	R	A	I	A	K	L	L	N	D	T	D	M	A	I	I	D	K	R	R	P	R	A	N	V	S	Q	V	M	H	I	I	G	D	V	A	G	R	D	C	V	L	V	D	D	.	.	.	M	I	D	T
Query Conservation																					.	.	.																																																				.	.	.
Alig confidence											.										.	.	.																.																																				.	.	.
Template Conservation											.																												.
Template Sequence		L	A	R	Y	F	Q	K	R	G	.	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	.	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D
Template Known Secondary structure								T	T	T	.											S	S	T											G	G	G	T	.							T	T																		T	T		S										S	S
Template Predicted Secondary structure											.																												.
Template SS confidence
		120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.
Predicted Secondary structure																									.	.																	.
Query SS confidence																									.	.																	.
Query Sequence		G	G	T	L	C	K	A	A	E	A	L	K	E	R	G	A	K	R	V	F	A	Y	A	.	.	T	H	P	I	F	S	G	N	A	A	N	N	L	R	N	S	.	V	I	D	E	V	V	V	C
Query Conservation																									.	.																	.
Alig confidence																									.	.																	.
Template Conservation
Template Sequence		K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	P	I	G	S	I	I	V	T
Template Known Secondary structure																		S								G	G	G	G	G	G											S		T	T
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions