Job Description P0A717 Confidence 32.43% Date Thu Jan 5 11:04:30 GMT 2012 Rank 187 Aligned Residues 118 % Identity 11% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.
Predicted Secondary structure																					.	.	.																																																						.	.
Query SS confidence																					.	.	.																																																						.	.
Query Sequence		L	L	E	D	M	L	Q	L	N	L	D	N	P	I	V	V	S	P	D	.	.	.	I	G	G	V	V	R	A	R	A	I	A	K	L	L	N	D	T	D	M	A	I	I	D	K	R	R	P	R	A	N	V	S	Q	V	M	H	I	I	G	D	V	A	G	R	D	C	V	L	V	D	D	M	I	.	.	D	T	G
Query Conservation																					.	.	.																																																						.	.
Alig confidence											.										.	.	.																.																									.													.	.
Template Conservation											.																												.																									.
Template Sequence		L	A	R	Y	I	Q	K	R	G	.	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	.	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	.	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E
Template Known Secondary structure											.									S				T	T	G	G	G	S	S							S	S	.							S	S	S			S	S	S	T	T							T	T	.	S	S		S									S		S	S
Template Predicted Secondary structure											.																												.																									.
Template SS confidence
		120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.						.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																							.	.	.	.	.
Query SS confidence																																							.	.	.	.	.
Query Sequence		G	T	L	C	K	A	A	E	A	L	K	E	R	G	A	K	R	V	F	A	Y	A	T	H	P	I	F	S	G	N	A	A	N	N	L	R	N	.	.	.	.	.	S	V	I	D	E	V	V	V	C
Query Conservation																																							.	.	.	.	.
Alig confidence																																							.	.	.	.	.
Template Conservation
Template Sequence		K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q	Q	A	G	I	Q	A	K	A	F	K	E	A	V	G	E	I	G	S	I	I	V	T
Template Known Secondary structure											T	T	S	S	S			S								G	G	G	G	G	G										T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions