Job Description P0A717 Confidence 100.00% Date Thu Jan 5 11:04:30 GMT 2012 Rank 4 Aligned Residues 298 % Identity 41% Template c2c4kD_ PDB info PDB header:regulatory protein Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase- PDBTitle: crystal structure of human phosphoribosylpyrophosphate2 synthetase-associated protein 39 (pap39) Resolution 2.65 Å

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		4	.	.	.	.	.	10	.	.				.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		M	K	L	F	A	G	N	A	T	.	.	.	P	E	L	A	Q	R	I	A	N	R	L	Y	T	S	L	G	D	A	A	V	G	R	F	S	D	G	E	V	S	V	Q	I	N	E	N	V	R	G	G	D	I	F	I	I	Q	S	T	C	A	P	T	N	D	N	L	M	E	L	V	V	M	V	D	A	L	R	R	A
Query Conservation											.	.	.
Alig confidence											.	.	.
Template Conservation
Template Sequence		Y	R	V	F	S	A	N	S	T	A	A	C	T	E	L	A	K	R	I	T	E	R	L	G	A	E	L	G	K	S	V	V	Y	Q	E	T	N	G	E	T	R	V	E	I	K	E	S	V	R	G	Q	D	I	F	I	I	Q	T	I	P	R	D	V	N	T	A	V	M	E	L	L	I	M	A	Y	A	L	K	T	A
Template Known Secondary structure										S	T	T	T	T										T	T												T	T	S								S			T	T											S																			T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		S	A	G	R	I	T	A	V	I	P	Y	F	G	Y	A	R	Q	D	R	R	V	R	S	A	R	V	P	I	T	A	K	V	V	A	D	F	L	S	S	V	G	V	D	R	V	L	T	V	D	L	H	A	E	Q	I	Q	G	F	F	D	V	P	V	D	N	V	F	G	S	P	I	L	L	E	D	M	L	Q	L	.
Query Conservation																																																																																	.
Alig confidence																											.	.																																																					.
Template Conservation																											.	.
Template Sequence		C	A	R	N	I	I	G	V	I	P	Y	F	P	Y	S	K	Q	S	K	M	R	K	R	G	S	.	.	I	V	C	K	L	L	A	S	M	L	A	K	A	G	L	T	H	I	I	T	M	D	L	H	Q	K	E	I	Q	G	F	F	S	F	P	V	D	N	L	R	A	S	P	F	L	L	Q	Y	I	Q	E	E	I
Template Known Secondary structure		T		S							S	S		T	T	T	T	T	T	S			S	S	S		.	.													T									S		S	S	G	G	G	G	G	S		S	S																			S
Template Predicted Secondary structure																											.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	N	L	D	N	P	I	V	V	S	P	D	I	G	G	V	V	R	A	R	A	I	A	K	L	L	N	D	T	D	M	A	I	I	D	K	R	R	P	R	A	N	V	S	Q	V	M	H	I	I	G	D	V	A	G	R	D	C	V	L	V	D	D	M	I	D	T	G	G	T	L	C	K	A	A	E	A	L	K	E
Query Conservation		.
Alig confidence		.																											.												.	.	.	.	.	.	.	.	.
Template Conservation																													.												.	.	.	.	.	.	.	.	.
Template Sequence		P	N	Y	R	N	A	V	I	V	A	K	S	P	D	A	A	K	R	A	Q	S	Y	A	E	R	L	R	.	L	G	L	A	V	I	H	P	P	I	T	.	.	.	.	.	.	.	.	.	V	V	G	D	V	G	G	R	I	A	I	I	V	D	D	I	I	D	D	V	E	S	F	V	A	A	A	E	I	L	K	E
Template Known Secondary structure		T	T	G	G	G						S	S	G	G	G												T	.												.	.	.	.	.	.	.	.	.			S			T	T								S			S	S	T												T
Template Predicted Secondary structure																													.												.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.										.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	A	K	R	V	F	A	Y	A	T	H	P	I	F	S	G	N	A	A	N	N	L	R	N	S	V	I	D	E	V	V	V	C	D	T	I	P	L	S	D	E	I	K	S	L	P	N	V	R	T	L	T	L	S	G	M	L	A	E	A	I	R	R	I	S	N	E	E	S	I	S	A	M	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	A	Y	K	I	Y	V	M	A	T	H	G	I	L	S	A	E	A	P	R	L	I	E	E	S	S	V	D	E	V	V	V	T	N	T	V	P	H	E	V	Q	K	L	Q	C	P	K	I	K	T	V	D	I	S	L	I	L	S	E	A	I	R	R	I	H	N	G	E	S	M	A	Y	L	F
Template Known Secondary structure		T	T															T	T								S	S								B	T	S										T	T																				T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions