Job Description P0A717 Confidence 37.26% Date Thu Jan 5 11:04:30 GMT 2012 Rank 172 Aligned Residues 105 % Identity 10% Template c2bp7F_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1) Resolution 2.9 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.																																		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	P	D	M	K	L	F	A	G	N	A	T	P	E	L	A	Q	R	I	A	N	R	L	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	G	D	A	A	V	G	R	F	S	D	G	E	V	S	V	Q	I	N	E	N
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation																																																																																.	.
Template Sequence		V	C	G	L	R	T	V	M	P	S	N	P	Y	D	A	K	G	L	L	I	A	S	I	E	C	D	D	P	V	I	F	L	E	P	K	R	L	Y	N	G	P	F	D	G	H	H	D	R	P	V	T	P	W	S	K	H	P	H	S	A	V	P	D	G	Y	Y	T	V	P	L	D	K	A	A	I	T	R	P	.	.
Template Known Secondary structure		S	T	T								S															S	S								G	G	G	S	S	S				S		S	S	S					G	G	G	S	T	T					S	S						T	T								.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	G	G	D	I	F	I	I	Q	S	T	C	A	P	T	N	D	N	L	M	E	L	V	V	M	V	D	A	L	R	R	A	S	A	G	R	I	T	A	V	I	P	Y	F	G	Y	A	R	Q	D	R	R	V	R	S	A	R	V	P	I	T	A	K	V	V	A	D	F	L	S	S	V	G	V	D	R	V	L	T
Query Conservation
Alig confidence		.	.													.	.	.	.	.	.	.	.														.												.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation		.	.													.	.	.	.	.	.	.	.														.												.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		.	.	G	N	D	V	S	V	L	T	Y	G	T	T	.	.	.	.	.	.	.	.	V	Y	V	A	Q	V	A	A	E	E	S	G	V	.	D	A	E	V	I	D	L	R	S	L	W	.	.	.	.	.	.	.	.	.	.	.	.	P	L	D	L	D	T	I	V	E	S	V	K	K	.	.	T	G	R	C	V	V
Template Known Secondary structure		.	.		S	S							T	T		.	.	.	.	.	.	.	.														.								S				.	.	.	.	.	.	.	.	.	.	.	.	S													.	.		S
Template Predicted Secondary structure		.	.													.	.	.	.	.	.	.	.														.												.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
				220	.	.	.	.	.	.	.	.	.	230	.									.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.													.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.
		128	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	H	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	H	E	A	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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