Job Description P0A717 Confidence 76.63% Date Thu Jan 5 11:04:30 GMT 2012 Rank 83 Aligned Residues 139 % Identity 17% Template c1vi2B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase 2; PDBTitle: crystal structure of shikimate-5-dehydrogenase with nad Resolution 2.10 Å

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		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.
Predicted Secondary structure																						.																																																			.	.	.	.
Query SS confidence																						.																																																			.	.	.	.
Query Sequence		P	I	T	A	K	V	V	A	D	F	L	S	S	V	G	V	D	R	V	L	.	T	V	D	L	H	A	E	Q	I	Q	G	F	F	D	V	P	V	D	N	V	F	G	S	P	I	L	L	E	D	M	L	Q	L	N	L	D	N	P	I	V	V	S	P	D	I	G	G	V	V	R	.	.	.	.	A	R	A	I	A
Query Conservation																						.																																																			.	.	.	.
Alig confidence																						.																.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	S	P	E	X	Q	N	K	A	L	E	K	A	G	L	P	F	T	Y	X	A	F	E	V	D	N	D	S	F	P	G	A	I	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	A	L	K	X	R	G	T	G	V	S	X	P	N	K	Q	L	A	C	E	Y	V	D	E	L	T	P	A	A
Template Known Secondary structure			S												T	T		S										T	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.					T		S						T	T	S					G	G	G		S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.															.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.								.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.
Query Sequence		K	L	L	N	D	T	D	M	A	I	I	D	K	R	R	P	R	A	N	V	S	Q	V	M	H	I	I	.	.	.	.	.	.	.	G	D	V	A	G	R	D	C	V	L	V	D	D	M	I	D	T	G	G	T	L	C	K	A	A	E	A	L	K	E	R	G	A	K	R	V	F	A	Y	A	T	H	P	I	F	S
Query Conservation																													.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.												.	.	.	.
Template Conservation																																															.	.	.	.
Template Sequence		K	L	V	G	A	I	N	T	I	V	N	D	D	G	Y	L	R	G	Y	N	T	D	G	T	G	H	I	R	A	I	K	E	S	G	F	D	I	K	G	K	T	X	V	L	L	.	.	.	.	G	A	G	G	A	S	T	A	I	G	A	Q	G	A	I	E	G	L	K	E	I	K	L	F	N	R	R	D	E	F	F
Template Known Secondary structure					T			S						T	T																				T				T	T							.	.	.	.			S													T	T										S	S
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		255	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	A	A	N	N	L	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	A	L	A	F	A	Q	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions