Job Description P0A717 Confidence 37.85% Date Thu Jan 5 11:04:30 GMT 2012 Rank 171 Aligned Residues 119 % Identity 10% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220					.	.	.	.
Predicted Secondary structure																					.	.	.																																																			.	.	.	.
Query SS confidence																					.	.	.																																																			.	.	.	.
Query Sequence		L	L	E	D	M	L	Q	L	N	L	D	N	P	I	V	V	S	P	D	.	.	.	I	G	G	V	V	R	A	R	A	I	A	K	L	L	N	D	T	D	M	A	I	I	D	K	R	R	P	R	A	N	V	S	Q	V	M	H	I	I	G	D	V	A	G	R	D	C	V	L	V	D	.	.	.	.	D	M	I	D
Query Conservation																					.	.	.																																																			.	.	.	.
Alig confidence											.										.	.	.																.																																			.	.	.	.
Template Conservation											.																												.
Template Sequence		L	A	Y	F	Y	K	K	R	G	.	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	.	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G
Template Known Secondary structure								T	T	S	.					B						S	S	S		S											T	T	.							S	S				T	T													T	T		S									S			S	S
Template Predicted Secondary structure											.																												.
Template SS confidence
		116	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		T	G	G	T	L	C	K	A	A	E	A	L	K	E	R	G	A	K	R	V	F	A	Y	A	T	H	P	I	F	S	G	N	A	A	N	N	L	R	N	S	.	.	.	.	V	I	D	E	V	V	V	C
Query Conservation																																										.	.	.	.
Alig confidence																																										.	.	.	.
Template Conservation
Template Sequence		E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I	G	S	V	I	I	T
Template Known Secondary structure		T																		S								T	T	T	G	G	G	G									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions