Job Description P0A6Z1 Confidence 99.85% Date Thu Jan 5 11:04:16 GMT 2012 Rank 31 Aligned Residues 293 % Identity 20% Template c2ychA_ PDB info PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex Resolution 2.20 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	R	L	A	A	G	I	D	L	G	T	T	N	S	L	V	A	T	V	R	S	G	Q	A	E	T	L	A	D	H	E	G	R	H	L	L	P	S	V	V	H	Y	Q	Q	Q	G	H	S	V	G	Y	D	A	R	T	N	A	A	L	D	T	A	N	T	I	S	S	V	K	R	L	M	G	R	S	L	A	D	I
Query Conservation
Alig confidence																													.	.																	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																													.	.																	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Sequence		P	R	V	E	A	L	G	L	E	I	G	A	S	A	L	K	L	V	E	V	S	G	N	P	P	A	L	.	.	K	A	L	A	S	R	P	T	P	P	G	L	L	X	E	G	.	.	.	.	.	.	.	.	.	.	.	.	X	V	A	E	P	A	A	L	A	Q	E	I	K	E	L	L	L	E	.	.	.	.	.
Template Known Secondary structure													S	S									T	T	T	T			.	.										T	T	S			T	T	.	.	.	.	.	.	.	.	.	.	.	.			S																.	.	.	.	.
Template Predicted Secondary structure																													.	.																	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.													.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.																		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	R	Y	P	H	L	P	Y	Q	F	Q	A	S	E	N	G	L	P	M	I	E	T	A	A	G	L	L	N	P	V	R	V	S	A	D	I	L	K	A	L	A	A	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	A	L	A	G	E	L	D	G	V	V	I	T	V	P	A	Y
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation		.																																																																															.
Template Sequence		.	A	R	T	R	K	R	Y	V	V	T	A	L	S	N	L	A	V	I	L	R	P	I	Q	V	P	K	X	P	L	K	E	X	E	E	A	V	R	W	E	A	E	R	Y	I	P	F	P	I	E	V	V	L	D	F	A	P	L	T	P	L	S	E	V	Q	E	G	E	Q	V	Q	V	X	V	A	A	A	R	Q	.
Template Known Secondary structure		.		T												G	G	G																									G	G	G		S	S											S	S		G	G	G	S		T	T	S												.
Template Predicted Secondary structure		.																																																																															.
Template SS confidence
			72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		F	D	D	A	Q	R	Q	G	T	K	D	A	A	R	L	A	G	L	H	V	L	R	L	L	N	E	P	T	A	A	A	I	A	Y	.	.	G	L	D	S	G	Q	E	G	V	I	A	V	Y	D	L	G	G	G	T	F	D	I	S	I	L	R	L	S	R	G	V	F	E	V	L	A	T	G	G	D	S	A	L	G
Query Conservation																																				.	.
Alig confidence		.	.	.																																.	.																														.	.	.	.	.
Template Conservation		.	.	.																																																															.	.	.	.	.
Template Sequence		.	.	.	E	A	V	A	G	V	L	E	A	L	R	G	A	G	L	V	P	V	V	L	D	V	K	P	F	A	G	L	Y	P	L	E	A	R	L	A	E	E	P	D	R	V	F	L	V	L	D	I	G	A	E	S	T	S	L	V	L	L	R	G	D	K	.	.	.	.	.	P	L	A	V	R	V	L	T	L	S
Template Known Secondary structure		.	.	.													T	T													T	T	G	G	G						T	S	T	T										S	S									T	T		.	.	.	.	.								S		S
Template Predicted Secondary structure		.	.	.																																																															.	.	.	.	.
Template SS confidence
					151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.						.	.	.	.	.	.	.	220	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	D	F	D	H	L	L	A	D	Y	I	R	E	Q	A	G	I	P	D	R	S	D	N	R	V	Q	R	E	L	L	D	A	A	I	A	A	K	I	A	L	S	D	A	D	S	V	T	V	N	V	A	G	W	Q	G	E	I	S	R	E	Q	F	N	E	L	I	A	P	L	V	K	R	T	L	L	A	C	R	R
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	K	D	F	T	E	A	I	A	R	S	F	N	L	D	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	E	E	V	K	R	T	Y	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Y	D	A	I	R	P	V	L	V	E	L	T	Q	E	L	R	R
Template Known Secondary structure													T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.																240	.	.	.	.	.	.	.	.	.	250																				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.																						.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	K	D	A	G	V	E	A	D	E	V	L	E	V	V	M	V	G	G	S	T	R	V	P	L	V	R	E	R	V	G	E	F	F	G	R	P	P	L	T	S	I	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	V	V	A	I	G	A	A	I	Q	A
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.																																	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																																	.
Template Sequence		S	L	E	F	F	R	.	I	Q	L	S	P	E	V	G	Y	L	L	G	G	G	S	K	L	R	G	L	A	S	L	L	T	D	T	L	G	V	N	L	.	E	P	V	N	P	W	E	A	V	A	V	D	P	K	R	F	E	S	E	Q	L	Q	E	I	G	P	E	F	A	V	A	L	G	L	A	L	R	G
Template Known Secondary structure								.						S						S	G	G	G	G	S	T	T										T	S			.					G	G	G	G	S	B			T	T	T	S
Template Predicted Secondary structure								.																																	.
Template SS confidence
		294	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions