Job Description P0A6Z1 Confidence 96.82% Date Thu Jan 5 11:04:16 GMT 2012 Rank 93 Aligned Residues 298 % Identity 12% Template c2ch5D_ PDB info PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine Resolution 1.9 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	L	A	A	G	I	D	L	G	T	T	N	S	L	V	A	T	V	R	S	G	Q	A	E	T	L	A	D	H	E	G	R	H	L	L	P	S	V	V	H	Y	Q	Q	Q	G	H	S	V	G	Y	D	A	R	T	N	A	A	L	D	T	A	N	T	I	S	S	V	K	R	L	M	G	R	S	L	A	D	I	Q
Query Conservation
Alig confidence																												.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	I	Y	G	G	V	E	G	G	G	T	R	S	E	V	L	L	V	S	E	D	G	K	I	L	.	.	.	.	.	A	E	A	D	G	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	H	W	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S										T	T									T	T	S				.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.						.	.	30	.	.	.	.																					.	.	.	.	.	40
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																	.	.	.
Query SS confidence																																																	.	.	.
Query Sequence		Q	R	Y	P	H	L	P	Y	Q	F	Q	A	S	E	N	G	L	P	M	I	E	T	A	A	G	L	L	N	P	V	R	V	S	A	D	I	L	K	A	L	A	A	R	A	T	E	A	.	.	.	L	A	G	E	L	D	G	V	V	I	T	V	P	A	Y	F	D	D	A	Q	R	Q	G	T	K	D	A	A	R	L
Query Conservation																																																	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	D	K	C	V	E	R	I	N	E	M	V	N	R	A	K	R	K	A	G	V	D	P	L	V	P	L	R	S	L	G	L	S	L	S	G	G	D	Q	E	D	A	G	R	I	L	I	E	E	L	R	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					T			T	T			B	S							T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																													41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		175	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.																																																							.	.	.
Query SS confidence						.	.	.																																																							.	.	.
Query Sequence		A	G	L	H	.	.	.	V	L	R	L	L	N	E	P	T	A	A	A	I	A	Y	G	L	D	S	G	Q	E	G	V	I	A	V	Y	D	L	G	G	G	T	F	D	I	S	I	L	R	L	S	R	G	V	F	E	V	L	A	T	G	G	.	.	.	D	S	A	L	G	G	D	D	F	D	H	L	L	A	D	Y
Query Conservation						.	.	.																																																							.	.	.
Alig confidence						.	.	.															.	.	.	.	.																.	.																			.	.	.
Template Conservation																							.	.	.	.	.																.	.
Template Sequence		R	F	P	Y	L	S	E	S	Y	L	I	T	T	D	A	A	G	S	I	A	T	.	.	.	.	.	A	T	P	D	G	G	V	V	L	I	S	G	T	G	S	.	.	N	C	R	L	I	N	P	D	G	S	E	S	G	C	G	G	W	G	H	M	M	G	D	E	G	S	A	Y	W	I	A	H	Q	A	V	K	I
Template Known Secondary structure				T	T	S	B	S															.	.	.	.	.			S	S								S	S	S		.	.							T	T	S										T	T	T			T	T	S
Template Predicted Secondary structure																							.	.	.	.	.																.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.						.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300															.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	R	E	Q	A	G	I	P	D	R	S	D	N	R	V	Q	R	E	L	L	D	A	A	I	A	A	K	I	A	L	S	D	A	D	S	V	T	V	N	V	A	G	W	Q	G	E	I	S	R	E	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	L	I	A	P	L	V	K	R	T	L	L	A
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		V	F	D	S	I	D	N	L	E	A	A	P	H	D	I	G	Y	V	K	Q	A	M	F	H	Y	F	Q	V	P	D	R	L	G	I	.	.	.	.	.	L	T	H	L	Y	R	D	F	D	K	C	R	F	A	G	F	C	R	K	I	A	E	G	A	Q	Q	G	D	P	L	S	R	Y	I	F	R	K	A	G	E	M
Template Known Secondary structure								T	S	S			S	S														T		S	S					.	.	.	.	.					T	T	T								T	T										T	T
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.									.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.						.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																			.	.	.	.	.	.	.	.											.												.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.											.												.	.	.	.	.
Query Sequence		C	R	R	A	L	K	D	A	G	V	E	A	D	E	V	L	E	.	.	.	.	.	.	.	.	V	V	M	V	G	G	S	T	R	V	.	P	L	V	R	E	R	V	G	E	F	F	.	.	.	.	.	G	R	P	P	L	T	S	I	D	P	D	K	V	V	A	I	G	A	A	I	Q	A	D	I	L	V	G	N
Query Conservation																			.	.	.	.	.	.	.	.											.												.	.	.	.	.
Alig confidence										.									.	.	.	.	.	.	.	.											.												.	.	.	.	.
Template Conservation										.
Template Sequence		L	G	R	H	I	V	A	V	.	L	P	E	I	D	P	V	L	F	Q	G	K	I	G	L	P	I	L	C	V	G	S	V	W	K	S	W	E	L	L	K	E	G	F	L	L	A	L	T	Q	G	R	E	I	F	S	S	F	T	L	M	K	L	R	H	S	S	A	L	G	G	A	S	L	G	A	R	H	I	G	H
Template Known Secondary structure										.	G	G	G	S		G	G	G	G		S	S	S								S	G	G	G	G	G																												S	S		T											T	T	T
Template Predicted Secondary structure										.
Template SS confidence
		242	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	D	S	E	M	L	L	L	D	V	I	P	L	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	P	M	D	Y	S	A	N	A	I	A	F	Y	S	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions