Job Description P0A6Z1 Confidence 96.97% Date Thu Jan 5 11:04:16 GMT 2012 Rank 90 Aligned Residues 262 % Identity 18% Template c1z05A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Resolution 2.00 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	Q	R	R	L	A	A	G	I	D	L	G	T	T	N	S	L	V	A	T	V	R	S	G	Q	A	E	T	L	A	D	H	E	G	R	H	L	L	P	S	V	V	H	Y	Q	Q	Q	G	H	S	V	G	Y	D	A	R	T	N	A	A	L	D	T	A	N	T	I	S	S	V	K	R	L	M	G	R	S	L	A
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	N	L	G	W	Q	F	L	S	M	R	L	G	R	G	Y	L	T	I	A	L	H	E	L	G	G	E	V	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T										T	T									T	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																							.	.																		.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.																		.	.	.	.	.	.	.	.
Query Sequence		D	I	Q	Q	R	Y	P	H	L	P	Y	Q	F	Q	A	S	E	N	G	L	P	M	I	E	T	A	A	G	L	L	N	P	V	R	V	S	A	D	I	L	K	A	L	A	A	R	A	T	E	A	L	A	G	.	.	E	L	D	G	V	V	I	T	V	P	A	Y	F	D	D	A	Q	.	.	.	.	.	.	.	.
Query Conservation																																																							.	.																		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.																		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	K	I	D	I	H	E	I	D	Q	D	D	V	L	A	R	L	L	F	E	I	E	E	F	F	Q	T	Y	A	A	Q	L	D	R	V	T	S	I	A	I	T	L	P	G	L	V	N	S	E	Q	G	I	V	L	Q	M	P	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										B																			T	T	T	T												S	S				T	T	T	T						S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																							110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
							165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																.	.
Query SS confidence		.	.	.	.	.																																.	.
Query Sequence		.	.	.	.	.	R	Q	G	T	K	D	A	A	R	L	A	G	L	H	V	L	R	L	L	N	E	P	T	A	A	A	I	A	Y	G	L	.	.	D	S	G	Q	E	G	V	I	A	V	Y	D	L	G	G	G	T	F	D	I	S	I	L	R	L	S	R	G	V	F	E	V	L	A	T	G	G	D	S	A	L	G
Query Conservation		.	.	.	.	.																																.	.
Alig confidence		.	.	.	.	.																.																.	.																	.	.	.
Template Conservation																						.																																		.	.	.
Template Sequence		Y	N	V	K	N	L	A	L	G	P	E	I	Y	K	A	T	G	L	P	V	.	F	V	A	N	D	T	R	A	W	A	L	A	E	K	L	F	G	H	S	Q	D	V	D	N	S	V	L	I	S	I	H	H	G	.	.	.	L	G	A	G	I	V	L	D	G	R	V	L	Q	G	R	H	G	N	I	G	E	L	G
Template Known Secondary structure		S	B		S	S	B												S			.																	S	T	T	T	T		S	S							S	S	S	.	.	.								T	T					T	T	T	T		T	T	B		T
Template Predicted Secondary structure																						.																																		.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
																										238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	D	F	D	H	L	L	A	D	Y	I	R	E	Q	A	G	I	P	D	R	S	D	N	R	V	Q	R	E	L	L	D	A	A	I	A	A	K	I	A	L	S	D	A	D	S	V	T	V	N	V	A	G	W	Q	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	I	Q	I	D	P	Q	G	K	R	C	H	C	G	N	Y	G	C	L	E	T	V	A	S	S	Q	A	I	R	D	Q	V	T	A	R	I	Q	A	G	E	P	S	C	L	A	T	V	E	E	I	S	I	E	D	I	C	A	A	A	A	D	G	D	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S	B			T	T			B		T	T	S		B	S	B	T					S														T	T				T	T	T	T		S	S												T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.											.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																																	.													.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.													.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	S	R	E	Q	F	N	E	L	I	A	P	L	V	K	R	T	L	L	A	C	R	R	A	L	K	D	A	G	V	E	A	D	E	V	L	E	V	V	M	V	G	G	S	T	R	.	V	P	L	V	R	E	R	V	G	E	F	F	.	.	.	.	.	.	.	.	.	.	G	R	P	P	L	T	S	I	D	P
Query Conservation																																																	.													.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																									.	.	.	.	.													.													.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																									.	.	.	.	.
Template Sequence		.	.	.	.	.	.	A	V	D	V	I	Q	Q	L	G	R	Y	L	G	A	A	I	A	I	V	I	N	L	F	N	.	.	.	.	.	P	E	K	I	L	I	G	G	V	I	N	Q	A	K	S	I	L	Y	P	S	I	E	Q	C	I	R	E	Q	S	L	P	V	Y	H	Q	D	L	K	L	V	E	S	R	F	Y
Template Known Secondary structure		.	.	.	.	.	.																									.	.	.	.	.		S						S	G	G	G	G	G																S						T	T							S		S
Template Predicted Secondary structure		.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
								310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.						.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	V	V	A	I	G	A	A	I	Q	A	D	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Q	A	T	M	P	G	A	A	L	I	K	Q	A	L
Template Known Secondary structure		S		T	T
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions