Job Description P75791 Confidence 99.34% Date Thu Jan 5 12:14:10 GMT 2012 Rank 3 Aligned Residues 220 % Identity 18% Template c2opwA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) Resolution 1.90 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.																																		.	120
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	A	E	Q	R	E	Q	I	K	R	R	G	C	A	V	I	K	G	H	F	P	R	E	Q	A	L	G	W	D	Q	S	M	L	D	Y	L	D	R	N	R	F	D	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	P	S	Q	L	Q	K	F	Q	Q	D	G	F	L	V	L	E	G	F	L	S	A	E	E	C	V	A	M	Q	Q	R	I	G	E	I	V	A	E	M	D	V	P	L	H	C	R	T	E	F	S	T	Q	E	E	E	Q	L	R	A	Q	G	S	T	D	Y	F	L	S	S	G	D	K	I	R	F	F	F	E	K
Template Known Secondary structure														S					T	T	S	S																		T					G	G	G	S	S				S																	T	T	T	T	S							T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		G	P	G	D	N	F	F	G	T	L	S	A	S	R	P	E	I	Y	P	I	Y	W	.	.	.	.	.	S	Q	A	Q	M	Q	A	R	Q	S	E	E	M	A	N	A	Q	S	F	L	N	R	L	W	T	F	E	S	D	G	K	Q	W	F	N	P	D	V	S	V	I	Y	P	D	R	I	R	R	R	P	P	G	T
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	F	D	E	K	G	N	F	L	V	P	P	E	K	S	I	N	K	I	G	H	A	L	H	A	H	D	P	V	F	K	S	I	T	H	S	F	K	V	Q	T	L	A	R	S	L	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	M	P	V	V	V	Q	S	M	Y	I	F	K	Q	P	H	F
Template Known Secondary structure		T	S	B		T	T	S		B	S	S		G	G	G	S																				T												T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S													T	T	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.															.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	K	G	L	G	A	H	T	D	S	G	A	L	E	R	W	L	L	P	A	Y	Q	R	V	F	A	N	V	F	N	G	N	L	A	Q	Y	D	P	W	H	A	A	H	R	T	E	V	E	E	Y	T	V	D	N	T	T	K	C	S	V	F	R	T	F	Q	G	W	T	A	L	S	D	M	L	P	G	Q	G	L
Query Conservation
Alig confidence				.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	.	E	V	S	P	H	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	F	L	Y	T	E	P	L	G	R	V	L	G	V	W	I	A	V	E	D	A	T	L	E	N	G	C
Template Known Secondary structure		B		.							G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	S				S	S	S									S	S		B		T	T	T	T
Template Predicted Secondary structure				.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.		.	.	.	.	.	.	.																																											.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	V	V	P	I	P	E	A	M	A	Y	V	L	L	R	P	L	L	D	D	V	P	E	D	E	L	C	G	V	A	P	G	R	V	L	P	V	S	E	Q	W	H	P	L	L	I	E	A	L	T	S	I	P	K	L	E	A	G	D	S	V	W	W	H	C	D	V	I	H	S	V	A	P	V	E	N	Q	Q	G
Query Conservation
Alig confidence													.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	W	F	I	P	G	S	H	T	S	G	.	.	V	S	R	R	M	V	R	A	P	P	G	T	S	F	L	G	S	E	P	.	.	.	.	.	.	.	.	.	.	.	.	A	R	D	N	S	L	F	V	P	T	P	V	Q	R	G	A	L	V	L	I	H	G	E	V	V	H	K	S	K	Q	N	L	S	D	R	S
Template Known Secondary structure						T	T		S	S	S		.	.		S																		.	.	.	.	.	.	.	.	.	.	.	.				G	G	G						B		T	T							T	T								B		S	S	S
Template Predicted Secondary structure													.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.													.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		356	.	.	.	360			.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		W	G	N	V	M	.	.	Y	I	P	A
Query Conservation							.	.
Alig confidence							.	.
Template Conservation
Template Sequence		R	Q	A	Y	T	F	H	L	M	E	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions