 |
Job Description | P75791 | Confidence | 17.99% | Date | Thu Jan 5 12:14:10 GMT 2012 |
Rank | 95 | Aligned Residues | 54 |
% Identity | 13% | Template | c1e40A_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:alpha-amylase; |
PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a
|
Resolution | 2.2 Å |
|
 |
  |   |
35 | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | |
|
|
. | . | . | . | . | . | . | . | 70 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | F | N | Q | L | S | D | D | I | A | T | R | V | A | E | I | N | A | L | K | A | Q | G | D | A | V | W | . |
. |
. |
P | V | L | S | Y | A | D | I | K | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | H | V | T | A | E | Q | R | E | Q | I | K | R | R |
Query Conservation |   |
|
|   |
|
|   |   |   |
|   |   |   |
|
|
|
|   |   |   |   |   |   |
|   |   |   |
| . | . | . |
|   |
|   |
|   |
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
| . | . | . |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |
|
|   | . | . | . | . |
|
|
|   |
| . | . | . |
|
|   |
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|
|   |   |
|
|
|   |
|
|   |   |
|
|   |   |
Template Sequence |   |
H | W | K | R | L | Q | N | D | A | E | . |
. |
. |
. |
H | L | S | D | I | . |
. |
. |
G | I | T | A | V | W | I | P | P | A | Y | K | G | L | S | Q | S | D | N | G | Y | G | P | Y | D | L | Y | D | L | G | E | F | Q | Q | K | G | T | V | R | T | K | Y | G | T | K | S | E | L | Q | D | A | I | G | S | L | H | S | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  | . | . | . | T |
|
|  |  |  |  |
|
|
| S |  |  | S | S | T | T |
|
| S | S | S |  |  |  | T | T |
| S | S |
| S |
| B | T | T | B | S | S |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |
| . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
19 | 20 | . | . | . | . | . | . | . | . | |
|
|
|
. | 30 | . | . | . | |
|
|
. | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . |
  |
  |   |
86 | . | . | . | 90 | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | C | A | V | I | K | G | H | F | P |
Query Conservation |   |
|   |   |
|
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|
|
|
|   |
Template Sequence |   |
N | V | Q | V | Y | G | D | V | V | L |
Template Known Secondary structure |   |
T |
|  |  |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
  |   |
92 | . | . | . | . | . | . | . | 100 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|