Job Description P0A769 Confidence 98.72% Date Thu Jan 5 11:04:58 GMT 2012 Rank 5 Aligned Residues 355 % Identity 13% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		R	K	M	R	L	A	L	M	G	P	A	F	I	A	A	I	G	Y	I	D	P	G	N	F	A	T	N	I	Q	A	G	A	S	F	G	Y	Q	L	L	W	V	V	V	W	A	N	L	M	A	M	L	I	Q	I	L	S	A	K	L	G	I	A	T	G	K	.	.	N	L	A	E	Q	I	R	D	H	Y	P	R	P
Query Conservation																																																																			.	.
Alig confidence																							.																																												.	.
Template Conservation																							.
Template Sequence		D	A	H	K	V	G	L	I	P	V	T	L	M	V	S	G	N	I	M	G	S	.	G	V	F	L	L	P	A	N	L	A	S	T	G	G	I	A	I	Y	G	W	L	V	T	I	I	G	A	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	P	S	P	G	G	S	Y	A	Y	A	R	R	C	F	G	P	F
Template Known Secondary structure				S	S													T	T	S	S	S	.	S	T	T	T					T	T	S	S					S																						T	T				S	S		T	T	T	G	G	G	G	T	T
Template Predicted Secondary structure																							.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		V	V	W	F	Y	W	V	Q	A	E	I	I	A	M	A	T	D	L	A	E	F	I	G	A	A	I	G	F	K	L	I	L	.	.	.	.	.	G	V	S	L	L	Q	G	A	V	L	T	G	I	A	T	F	L	I	L	M	L	Q	R	R	G	Q	K	P	L	E	K	V	I	G	G	L	L	L	F	V	A	A	A
Query Conservation																																		.	.	.	.	.
Alig confidence																																		.	.	.	.	.
Template Conservation
Template Sequence		L	G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	V	V	I	G	V	G	Y	L	S	Y	F	F	P	I	L	K	D	P	L	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	K	M	I	T	R	V	Q	A	V	A	T	V	L	A	L	I	P	I	V	G
Template Known Secondary structure												T	T	T	T											T	G	G	G	S	S	S	S					S	S	S																			S		S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	V	E	L	I	F	S	Q	P	N	L	A	Q	L	G	K	G	M	V	I	P	S	L	P	T	S	E	A	V	F	L	A	A	G	V	L	G	A	T	I	M	P	H	V	I	Y	L	H	S	S	L	T	Q	H	L	H	G	G	S	R	Q	Q	R	Y	S	A	T	K	W	D	V	A	I	A	M	T	I	A	G
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	V	F	G	W	F	W	F	R	G	E	T	Y	M	A	A	W	N	V	S	G	L	G	T	.	.	.	.	.	.	.	.	.	.	.	.	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N	P	K	R	N	V	P	I	A	T	I	G	G	V
Template Known Secondary structure									S			S	S							S		S	S	S			.	.	.	.	.	.	.	.	.	.	.	.				T								S	T	T		T	T	G	G	G					G	G	G	S	S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.													190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		F	V	N	L	A	M	M	A	T	A	A	A	A	F	H	F	S	G	H	T	G	V	A	D	L	D	E	A	Y	L	T	L	Q	P	L	L	S	H	A	A	A	T	V	F	G	L	S	L	V	A	A	G	L	S	S	T	V	V	G	T	L	A	G	Q	V	V	M	Q	G	F	I	R	F	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	A	A	V	C	Y	V	L	S	T	T	A	I	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	P	N	T	A	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T	L	L	A	G	Q	T	A	K	A	A	A	D	D	G	L	F	P	P	I	F
Template Known Secondary structure												T	T				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T										T																T	T	S	S	T	T	T	S	S		S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.																			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
							321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.					.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure		.	.	.	.	.																													.	.	.	.
Query SS confidence		.	.	.	.	.																													.	.	.	.
Query Sequence		.	.	.	.	.	H	I	P	L	W	V	R	R	T	V	T	M	L	P	S	F	I	V	I	L	M	G	L	D	P	T	R	I	.	.	.	.	L	V	M	S	Q	V	L	L	S	F	G	I	A	L	A	L	V	P	L	L	I	F	T	S	D	S	K	L	M	G	D	L	V	N	S	K	R	V	K	Q	T	G	W
Query Conservation		.	.	.	.	.																													.	.	.	.
Alig confidence		.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		A	R	V	N	K	A	G	T	P	V	A	G	L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L	L	G	H	G	H	F	G	K	A	R	P	A	Y	L	A	V	T	T	I	A
Template Known Secondary structure						S	S	S	S																	T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T													T		T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		392	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	V	V	L	V	V	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	Y	C	I	W	A	V	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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