Job Description P0A769 Confidence 84.39% Date Thu Jan 5 11:04:58 GMT 2012 Rank 8 Aligned Residues 282 % Identity 12% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.							.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.
Query Sequence		Y	P	R	P	V	V	W	F	Y	W	V	Q	A	E	I	I	A	M	A	T	D	L	A	E	F	I	G	A	A	I	G	F	K	L	I	L	G	V	S	L	L	Q	G	A	V	L	T	G	I	A	T	F	L	I	L	M	L	Q	.	.	.	.	.	.	R	R	G	Q	K	P	L	E	K	V	I	G	G	L	L	L
Query Conservation																																																												.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F
Template Known Secondary structure																																		T	T	S	T	T				T																				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.							.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.											.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		F	V	A	A	A	Y	I	V	E	.	.	.	.	.	.	L	I	F	S	Q	P	N	L	A	Q	L	G	K	G	M	V	I	P	S	L	P	T	S	E	A	.	.	.	.	.	.	.	.	.	.	V	F	L	A	A	G	V	L	G	A	T	I	M	P	H	V	I	Y	L	H	S	S	L	T	Q	H	L	H	G	G
Query Conservation											.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.
Template Sequence		L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	.	.	.	.	.	.	.	.	.	A	R	I
Template Known Secondary structure																																				T					S	S								T											T									.	.	.	.	.	.	.	.	.			T
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.										.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.								270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.														.
Query SS confidence																																													.	.	.	.	.	.	.														.
Query Sequence		S	R	Q	Q	R	Y	S	A	T	K	W	D	V	A	I	A	M	T	I	A	G	F	V	N	L	A	M	M	A	T	A	A	A	A	F	H	F	S	G	H	T	G	V	.	.	.	.	.	.	.	A	D	L	D	E	A	Y	L	T	L	Q	P	L	.	L	S	H	A	A	A	T	V	F	G	L	S	L	V	A	A
Query Conservation																																													.	.	.	.	.	.	.														.
Alig confidence																																													.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		S	R	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A
Template Known Secondary structure			S	S																																			T	T	S								G	G	G												T	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.					.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		G	L	S	S	T	V	V	G	T	L	A	G	Q	V	V	M	Q	.	.	.	.	G	F	I	R	F	H	I	P	L	W	V	R	R	T	V	T	M	L	P	S	F	I	V	I	L	M	G	L	D	P	T	R	I	L	V	M	S	Q	V	L	L	S	F	G	I	A	L	A	L	V	P	L	L	I	F	T	S	D	S
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.																														.																.
Template Conservation																																																				.																.
Template Sequence		T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	.	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	.	F	F	V	N	I	M	V	T	L	S	F	I	K
Template Known Secondary structure																T	T	S		S	S	S	S	S		S	S		S	T	T																				S	.	S															.
Template Predicted Secondary structure																																																				.																.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.		.	470	.	.	.	.	.	.	.	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.	.	.
		375	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	M	G	D	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	K	Q	N	W	K
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
		497	.	.	500	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions