Job Description P0A769 Confidence 99.38% Date Thu Jan 5 11:04:58 GMT 2012 Rank 4 Aligned Residues 386 % Identity 10% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																																																			.	.													.
Query SS confidence																																																																			.	.													.
Query Sequence		R	K	M	R	L	A	L	M	G	P	A	F	I	A	A	I	G	Y	I	D	P	G	N	F	A	T	N	I	Q	A	G	A	S	F	G	Y	Q	L	L	W	V	V	V	W	A	N	L	M	A	M	L	I	Q	I	L	S	A	K	L	G	I	A	T	G	K	.	.	N	L	A	E	Q	I	R	D	H	Y	P	R	.
Query Conservation																																																																			.	.													.
Alig confidence																																																																			.	.													.
Template Conservation
Template Sequence		K	N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D	N
Template Known Secondary structure						B																		T	T	T	S									G	G	G																								T	T				T	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		P	V	V	W	F	Y	W	V	Q	A	E	I	I	A	M	A	T	D	L	A	E	F	I	G	A	A	I	G	F	K	L	I	L	G	.	.	V	S	L	L	Q	G	A	V	L	T	G	I	A	T	F	L	I	L	M	L	Q	R	R	G	Q	K	P	L	E	K	V	I	G	G	L	L	L	F	V	A	A	A	Y	I
Query Conservation																																				.	.
Alig confidence																																				.	.
Template Conservation
Template Sequence		I	I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L	I	L	G
Template Known Secondary structure																																		T	T																										T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	L	I	F	S	Q	P	N	L	A	Q	L	G	K	G	M	V	I	P	S	L	P	T	S	E	A	V	F	L	A	A	G	V	L	G	A	T	I	M	P	H	V	I	Y	L	H	S	S	L	T	Q	H	L	H	G	G	S	R	Q	Q	R	Y	S	A	T	K	W	D	V	A	I	A	M	T	I	A	G	F	V
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.
Template Sequence		L	F	I	F	A	G	L	I	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	.	.	.	.	.	.	.	.	.	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L	I	V	M	F
Template Known Secondary structure													G	G	G	T	S				S														G	.	.	.	.	.	.	.	.	.	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.										.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		N	L	A	M	M	A	T	A	A	A	A	F	H	F	S	G	H	T	G	V	A	D	L	D	E	A	Y	L	T	L	Q	P	L	L	S	H	A	A	A	T	V	F	G	L	S	L	V	A	A	G	L	S	S	T	V	V	G	T	L	A	G	Q	V	V	M	Q	G	F	I	R	F	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																																																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P	E	F	F	E	R
Template Known Secondary structure												T	T	S								T	G	G	G																																			T	T	T											S	S			S	S			T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
			321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	H	I	P	L	W	V	R	R	T	V	T	M	L	P	S	F	I	V	I	L	M	G	L	D	P	T	R	I	L	V	M	S	Q	V	L	L	S	F	G	I	A	L	A	L	V	P	L	L	I	F	T	S	D	S	K	L	M	G	D	L	V	N	S	K	R	V	K	Q	T	G	W	V	I	V	V	L	V	V	A
Query Conservation		.
Alig confidence		.																																		.	.
Template Conservation																																				.	.
Template Sequence		K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	M	E	G	V	A	S	I	T	S	.	.	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	K	E	I	V	I	F	S	F	I	V	V	L	G	V	F	L	L	L	L	Y
Template Known Secondary structure		T	S			S		T																	S											.	.																	T
Template Predicted Secondary structure																																				.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	I	W	L	L	V	G	T	A	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Q	W	I	T	N	R	F	V	F	Y	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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