Job Description P0A769 Confidence 99.68% Date Thu Jan 5 11:04:58 GMT 2012 Rank 3 Aligned Residues 397 % Identity 10% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		N	Y	R	V	E	S	S	S	G	R	A	A	R	K	M	R	L	A	L	M	G	P	A	F	I	A	A	I	G	Y	I	D	P	G	N	F	A	T	N	I	Q	A	G	A	S	F	G	Y	Q	.	L	L	W	V	V	V	W	A	N	L	M	A	M	L	I	Q	I	L	S	A	K	L	G	I	A	T	G	K	N	L
Query Conservation																																																			.
Alig confidence																																																			.
Template Conservation
Template Sequence		S	L	L	N	P	S	N	A	P	T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	I	N	F
Template Known Secondary structure		B				S	T	T	S				G	G	G			B															S	T										T	T	T	S																								T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.						.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		A	E	Q	I	R	D	H	Y	P	R	P	V	V	W	F	Y	W	V	Q	A	E	I	I	A	M	A	T	D	L	A	E	F	I	G	A	A	I	G	F	K	L	I	L	G	.	.	.	.	.	V	S	L	L	Q	G	A	V	L	T	G	I	A	T	F	L	I	L	M	L	Q	R	R	G	Q	K	P	L	E	K	V
Query Conservation																																														.	.	.	.	.
Alig confidence																																														.	.	.	.	.
Template Conservation
Template Sequence		T	V	A	A	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F
Template Known Secondary structure					T	T	T	T	S		T	T	T	T																																																							T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	G	L	L	L	F	V	A	A	A	Y	I	V	E	L	I	F	S	Q	P	N	L	A	Q	L	G	K	G	M	V	I	P	S	L	P	T	S	E	A	V	F	L	A	A	G	V	L	G	A	T	I	M	P	H	V	I	Y	L	H	S	S	L	T	Q	H	L	H	G	G	S	R	Q	Q	R	Y	S	A	T	K
Query Conservation
Alig confidence																																																																					.	.
Template Conservation																																																																					.	.
Template Sequence		A	S	P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	.	.	P	N	A	S	R	E	G	Q	T	K	A
Template Known Secondary structure																						T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				.	.	T	T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	D	V	A	I	A	M	T	I	A	G	F	V	N	L	A	M	M	A	T	A	A	A	A	F	H	F	S	G	H	T	G	V	A	D	L	D	E	A	Y	L	T	L	Q	P	L	L	S	H	A	A	A	T	V	F	G	L	S	L	V	A	A	G	L	S	S	T	V	V	G	T	L	A	G	Q	V	V	M	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S
Template Known Secondary structure																																S		S											T																				T	T						T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.											.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.
Query Sequence		F	I	R	F	H	I	P	L	W	V	R	R	T	V	T	M	L	P	S	F	I	V	I	L	M	G	L	D	P	T	R	I	L	V	M	S	Q	V	L	L	S	F	G	I	A	L	A	L	V	P	L	L	I	F	T	S	D	S	K	.	.	.	.	.	.	.	.	.	.	L	M	G	D	L	V	N	S	K	R	V
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.
Alig confidence																													.																																.	.	.	.	.	.	.	.	.	.
Template Conservation																													.
Template Sequence		T	F	P	R	V	F	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	.	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V
Template Known Secondary structure			S	T	T	T																	T		G	G	G	T	.														T	T													T	T	S	T	T								T	B	S	S	S	T	T		T	B	T	T	B
Template Predicted Secondary structure																													.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	T	G	W	V	I	V	V	L	V	V	A	L	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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