Job Description P37653 Confidence 99.96% Date Wed Jan 25 15:20:53 GMT 2012 Rank 2 Aligned Residues 242 % Identity 12% Template c2ffuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 Resolution 1.64 Å

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		257	.	.	260	.	.	.	.	.	.	.	.	.								270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																																																							.
Query SS confidence															.	.	.	.	.	.	.																																																							.
Query Sequence		P	L	N	R	Q	P	V	P	L	P	K	D	M	.	.	.	.	.	.	.	S	L	W	P	S	V	D	I	F	V	P	T	Y	N	E	D	L	N	V	V	K	N	T	I	Y	A	S	L	G	I	D	W	P	K	D	K	L	N	I	W	I	L	D	D	G	G	R	E	E	F	R	Q	F	A	.	Q	N	V	G	V
Query Conservation															.	.	.	.	.	.	.																																																							.
Alig confidence															.	.	.	.	.	.	.																																																							.
Template Conservation
Template Sequence		R	M	D	R	A	I	P	D	T	R	H	D	Q	C	Q	R	K	Q	W	R	V	D	L	P	A	T	S	V	V	I	T	F	H	N	E	A	R	S	A	L	L	R	T	V	V	S	V	L	K	K	S	P	P	H	L	I	K	E	I	I	L	V	D	D	Y	S	N	D	P	E	D	G	A	L	L	G	K	I	E	K
Template Known Secondary structure			T	T							S		G	G	G	G	G					S	S											S	S																	S		G	G	G										S		S		T					G	G	G	G	B	T	T
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		K	Y	I	A	R	T	T	H	E	H	A	K	A	G	N	I	N	N	A	L	K	Y	A	K	G	E	F	V	S	I	F	D	C	D	H	V	P	T	R	S	F	L	Q	M	T	M	G	W	F	L	K	E	K	Q	L	A	M	M	Q	T	P	H	H	F	F	S	P	D	P	F	E	R	N	L	G	R	F	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																									.																						.	.	.
Template Conservation																																																									.
Template Sequence		V	R	V	L	R	N	D	R	R	E	G	L	M	R	S	R	V	R	G	A	D	A	A	Q	A	K	V	L	T	F	L	D	S	H	C	E	C	N	E	H	W	L	E	P	L	L	E	R	V	A	E	D	R	T	R	.	V	V	S	P	I	I	D	V	I	N	M	D	N	F	Q	Y	V	G	A	S	A	D	L	K
Template Known Secondary structure								S	S																	S	S							S	S					T	T													T	T		.											T	T	T								S	S
Template Predicted Secondary structure																																																									.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
											406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.				.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																		.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																		.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	R	K	T	P	N	E	G	T	L	F	Y	G	L	V	Q	D	G	N	D	M	W	D	A	T	F	F	C	G	S	C	A	V	I	R	R	K	P	L	D	E	I	G	G	I	A	V	E	T	V	.	.	.	T	E	D	A	H	T	S	L	R	L	H	R	R	G	Y	T	S	A	Y
Query Conservation		.	.	.	.	.	.	.	.	.																																																		.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																		.	.	.
Template Conservation
Template Sequence		G	G	F	D	W	N	L	V	F	K	W	D	Y	M	T	P	E	Q	R	R	S	R	Q	G	N	P	V	A	P	I	K	T	P	M	I	A	G	G	L	F	V	M	D	K	F	Y	F	E	E	L	G	K	Y	D	M	M	M	D	V	W	G	G	E	N	L	E	I	S	F	R	V	W	Q	C	G	G	S	L	E	I
Template Known Secondary structure						T	T																T	S	S		T	T	S					S	S			S	S	S											T	T				T	T			S	S	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		474	.	.	.	.	.	480	.									.	.	.	.	.	.	.	.	490	.		.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.											.
Query SS confidence										.	.	.	.	.	.	.	.											.
Query Sequence		M	R	I	P	Q	A	A	G	.	.	.	.	.	.	.	.	L	A	T	E	S	L	S	A	H	I	.	G	Q	R	I	R	W	A	R
Query Conservation										.	.	.	.	.	.	.	.											.
Alig confidence										.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		I	P	C	S	R	V	G	H	V	F	R	K	Q	H	P	Y	T	F	P	G	G	S	G	T	V	F	A	R	N	T	R	R	A	A	E
Template Known Secondary structure													S	S			S			T	T
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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