Job Description P37653 Confidence 99.96% Date Wed Jan 25 15:20:53 GMT 2012 Rank 5 Aligned Residues 203 % Identity 16% Template c2d7iA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10; PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+ Resolution 2.50 Å

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		263	.	.	.	.	.	.											270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.						320	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.
Query Sequence		V	P	L	P	K	D	M	.	.	.	.	.	.	.	.	.	.	S	L	W	P	S	V	D	I	F	V	P	T	Y	N	E	D	L	N	V	V	K	N	T	I	Y	A	S	L	G	I	D	W	P	K	D	K	L	N	I	W	I	L	D	D	G	G	R	E	E	F	.	.	.	.	.	R	Q	F	A	Q	N	V	G
Query Conservation									.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.
Template Conservation
Template Sequence		R	S	L	P	D	I	R	H	P	N	C	N	S	K	R	Y	L	E	T	L	P	N	T	S	I	I	I	P	F	H	N	E	G	W	S	S	L	L	R	T	V	H	S	V	L	N	R	S	P	P	E	L	V	A	E	I	V	L	V	D	D	F	S	D	R	E	H	L	K	K	P	L	E	D	Y	M	A	L	F	P
Template Known Secondary structure								S		G	G	G	G	T					S	S											S	S																	S		G	G	G										S				G	G	G	T								T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	Y	I	A	R	T	T	H	E	H	A	K	A	G	N	I	N	N	A	L	K	Y	A	K	G	E	F	V	S	I	F	D	C	D	H	V	P	T	R	S	F	L	Q	M	T	M	G	W	F	L	K	E	K	Q	L	A	M	M	Q	T	P	H	H	F	F	S	P	D	P	F	E	R	N	L	G	R	F	R	K
Query Conservation
Alig confidence																																																									.
Template Conservation																																																									.
Template Sequence		S	V	R	I	L	R	T	K	K	R	E	G	L	I	R	T	R	M	L	G	A	S	V	A	T	G	D	V	I	T	F	L	D	S	H	C	E	A	N	V	N	W	L	P	P	L	L	D	R	I	A	R	N	R	K	.	T	I	V	C	P	M	I	D	V	I	D	H	D	D	F	R	Y	E	T	Q	A	G	D	A
Template Known Secondary structure		T							S	S																	S	S							S	S					T	T		S											T	T	.												T	T	T							T	T	S	S
Template Predicted Secondary structure																																																									.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.																									.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.				.	.	.	.	.	460
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query Sequence		T	P	N	E	G	T	L	F	Y	G	L	V	Q	D	G	N	D	M	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	T	F	F	C	G	S	C	A	V	I	R	R	K	P	L	D	E	I	G	G	I	A	V	E	T	V	.	.	.	T	E	D	A	H	T
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	A	F	D	W	E	M	Y	Y	K	R	I	P	I	P	P	E	L	Q	K	A	D	P	S	D	P	F	E	S	P	V	M	A	G	G	L	F	A	V	D	R	K	W	F	W	E	L	G	G	Y	D	P	G	L	E	I	W	G	G	E	Q	Y	E	I
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T										T	T	T			S	S	T	T	S					S	S			S	S	S											T	T	S	S		T	T			S	S	S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		284															.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	R	L	H	R	R	G	Y	T	S	A	Y	M	R	I	P	Q	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	F	K	V	W	M	C	G	G	R	M	E	D	I	P	C	S	R	V	G
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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