 |
Job Description | P37653 | Confidence | 88.52% | Date | Wed Jan 25 15:20:53 GMT 2012 |
Rank | 45 | Aligned Residues | 100 |
% Identity | 18% | Template | c2d0jD_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta- |
PDBTitle: crystal structure of human glcat-s apo form
|
Resolution | 2.00 Å |
|
 |
  |   |
272 | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | |
|
. | . | . | . | . | 320 | . | . | . | . | . | . | . | . | |
|
. | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | |
|
|
. |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  | . | . | . |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
Query Sequence |   |
W | P | S | V | D | I | F | V | P | T | Y | N | E | D | L | N | V | V | K | N | T | I | Y | A | S | L | G | I | D | W | P | K | D | K | L | N | I | W | I | L | D | D | G | . |
. |
G | R | E | E | F | R | Q | F | A | Q | N | V | G | V | . |
. |
K | Y | I | A | R | T | T | H | E | H | A | K | A | G | N | . |
. |
. |
I |
Query Conservation |   |
  |
|   |
|
|
|
|
|
|
|
|
|
|   |   |   |
|
|   |   |
|
|   |
|
|
|   |
|
|
|
|   |
|
|
|
|
|   |
|
|
|
|
| . | . |
|
|
|
|
|   |
|
|
|   |   |   |
|
| . | . |   |
|
|   |
|   |   |
|   |   |
|
|
|
|
| . | . | . |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
Template Conservation |   |
|
|   |
|   |   |
|
|
|
|
|   |
|   |   |
|   |
|   |
|
|
|
|
|
|
|
|   |
|
|
| . | . |   |
|   |
|
|
|
|
|
|   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|
|
|   |
|   |
|
|   |   |   |   |
|   |   |   |   |   |
|
|   |   |
|
|
Template Sequence |   |
L | P | T | I | Y | A | I | T | P | T | Y | S | R | P | V | Q | K | A | E | L | T | R | L | A | N | T | F | R | Q | V | A | . |
. |
Q | L | H | W | I | L | V | E | D | A | A | A | R | S | E | L | V | S | R | F | L | A | R | A | G | L | P | S | T | H | L | H | V | P | T | P | R | R | G | L | P | R | A | T | E | Q | R |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  |
|
|
| T | T |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | T | . | . | T |  |  |  |  |  |  |  | S | S | S | S |
|
|  |  |  |  |  |  |  |  |  |  |
| S |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
| S |
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | |
|
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
  |
  |   |
345 | . | . | . | . | 350 | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | N | A | L | K | Y | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
K | G | E | F | V | S | I | F | D | C | D | H | V | P | T | R | S | F | L | Q | M | T |
Query Conservation |   |
|   |
|
|   |   |
| . | . | . | . | . | . | . | . | . |   |
|
|   |
|
|
|
|
|
|
|   |
|
|   |
|
|
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|
Template Sequence |   |
N | A | G | L | A | W | L | R | Q | R | H | Q | H | Q | R | A | Q | P | G | V | L | F | F | A | D | D | D | N | T | Y | S | L | E | L | F | Q | E | M |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | S |
| S | S | S |
|
|
|
|  |  |  |  |
|
| T | T |
|  |  |
| T |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
161 | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|