Job Description P0AB93 Confidence 0.64% Date Thu Jan 5 11:14:57 GMT 2012 Rank 61 Aligned Residues 193 % Identity 16% Template c3klzE_ PDB info PDB header:membrane protein Chain: E: PDB Molecule:putative formate transporter 1; PDBTitle: pentameric formate channel with formate bound Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		L	L	A	G	A	I	F	V	L	T	I	V	L	V	I	W	Q	P	K	G	L	G	I	G	W	S	A	T	L	G	A	V	L	A	L	V	T	G	V	V	H	P	G	D	I	P	V	V	W	N	I	V	W	N	A	T	A	A	F	I	A	V	I	I	I	S	L	L	L	D	E	S	G	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																			.	.	.																																.	.																					.	.	.	.	.	.	.
Template Conservation																			.	.	.																																.	.
Template Sequence		L	L	G	G	L	A	F	S	L	G	L	I	L	V	V	I	T	.	.	.	G	G	E	L	F	T	S	S	V	L	I	L	V	A	K	A	S	G	K	I	S	W	K	E	L	V	R	N	W	T	V	.	.	V	Y	F	G	N	L	C	G	S	I	I	L	V	F	I	M	L	A	T	R	Q	F	M	E	D	G	G
Template Known Secondary structure																			.	.	.	T				S	S												T	S	S												.	.																				T	G	G	G	T	G	G	G
Template Predicted Secondary structure																			.	.	.																																.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
			75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure		.																							.	.	.	.	.	.
Query SS confidence		.																							.	.	.	.	.	.
Query Sequence		.	F	F	E	W	A	A	L	H	V	S	R	W	G	N	G	R	G	R	L	L	F	T	.	.	.	.	.	.	W	I	V	L	L	G	A	A	V	A	A	L	F	A	N	D	G	A	A	L	I	L	T	P	I	V	I	A	M	L	L	A	L	G	F	S	K	G	T	T	L	A	F	V	M	A	A	G	F	I	A
Query Conservation		.																							.	.	.	.	.	.
Alig confidence		.																							.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	G	L	N	A	M	A	I	S	Q	H	K	L	H	H	T	F	L	Q	A	F	A	L	G	L	M	C	N	I	L	V	C	L	A	V	W	M	T	F	S	A	R	S	L	T	D	K	V	M	V	L	I	L	P	V	A	M	F	V	S	S	G	F	E	H	C	I	A	N	M	F	Q	V	P	M	A	I	G	I
Template Known Secondary structure													T	T	S																										T	T		S	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.						190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		D	T	A	S	L	P	L	I	V	S	N	L	V	N	I	V	S	A	D	F	F	G	L	G	F	R	E	Y	A	S	V	M	V	P	V	D	I	A	A	I	V	A	.	.	.	.	.	T	L	V	M	L	H	L	Y	F	R	K
Query Conservation																																												.	.	.	.	.
Alig confidence							.																																					.	.	.	.	.
Template Conservation							.
Template Sequence		K	Y	F	A	P	.	E	S	F	W	A	M	T	G	A	N	I	A	Q	Y	A	D	L	N	F	V	N	F	I	V	N	N	L	I	P	V	T	L	G	N	I	V	G	G	G	V	F	V	G	M	W	Y	W	L	I	Y	L	K
Template Known Secondary structure							.								T			G	G	G	G	T	T		S								T
Template Predicted Secondary structure							.
Template SS confidence
		223	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions