Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	P	I	L	S	W	R	R	V	R	A	L	C	V	K	E	T	R	Q	I	V	R	D	P	S	S	W	L	I	A	V	V	I	P	L	L	L	L	F	I	F	G	Y	G	I	N	L	D	S	S	K	L	R	V	G	I	L	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	Q	R	S	E	A	A	L	D	F	T	H	T	M	T	G	S	P	Y	I	D	A	T	I	S	D	N	R	Q	E	L	I	A	K	M	Q	A	G	K	I	R	G	L	V	V	I	P	V	D	F	A	E	Q	M	E	R	A	N	A	T
Secondary structure
SS confidence
Disorder																												?																													?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	P	I	Q	V	I	T	D	G	S	E	P	N	T	A	N	F	V	Q	G	Y	V	E	G	I	W	Q	I	W	Q	M	Q	R	A	E	D	N	G	Q	T	F	E	P	L	I	D	V	Q	T	R	Y	W	F	N	P	A	A	I	S	Q
Secondary structure
SS confidence
Disorder										?	?	?																						?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		H	F	I	I	P	G	A	V	T	I	I	M	T	V	I	G	A	I	L	T	S	L	V	V	A	R	E	W	E	R	G	T	M	E	A	L	L	S	T	E	I	T	R	T	E	L	L	L	C	K	L	I	P	Y	Y	F	L	G	M	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	M	L	L	C	M	L	V	S	V	F	I	L	G	V	P	Y	R	G	S	L	L	I	L	F	F	I	S	S	L	F	L	L	S	T	L	G	M	G	L	L	I	S	T	I	T	R	N	Q	F	N	A	A	Q	V	A	L	N	A	A
Secondary structure
SS confidence
Disorder																																																?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	L	P	S	I	M	L	S	G	F	I	F	Q	I	D	S	M	P	A	V	I	R	A	V	T	Y	I	I	P	A	R	Y	F	V	S	T	L	Q	S	L	F	L	A	G	N	I	P	V	V	L	V	V	N	V	L	F	L	I	A	S
Secondary structure
SS confidence
Disorder										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Sequence		A	V	M	F	I	G	L	T	W	L	K	T	K	R	R	L	D
Secondary structure
SS confidence
Disorder														?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3cni chain A Region: 55 - 192 Aligned: 137 Modelled: 134 Confidence: 99.3% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:putative abc type-2 transporter; PDBTitle: crystal structure of a domain of a putative abc type-2 transporter2 from thermotoga maritima msb8 Phyre2 PDB 2p0s chain A domain 1 Region: 55 - 154 Aligned: 90 Modelled: 100 Confidence: 94.6% Identity: 10% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: PG0945 N-terminal domain-like Phyre2 PDB 3eul chain B Region: 51 - 105 Aligned: 54 Modelled: 55 Confidence: 79.8% Identity: 11% PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis Phyre2 PDB 2gwr chain A Region: 50 - 105 Aligned: 54 Modelled: 56 Confidence: 73.8% Identity: 11% PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis Phyre2 PDB 1hey chain A Region: 51 - 105 Aligned: 54 Modelled: 55 Confidence: 72.2% Identity: 9% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1p6q chain A Region: 49 - 105 Aligned: 56 Modelled: 57 Confidence: 69.1% Identity: 13% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3cg4 chain A Region: 52 - 105 Aligned: 52 Modelled: 54 Confidence: 67.0% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 Phyre2 PDB 2ayx chain A domain 1 Region: 49 - 105 Aligned: 55 Modelled: 57 Confidence: 66.0% Identity: 4% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3fkq chain A Region: 52 - 108 Aligned: 56 Modelled: 56 Confidence: 66.0% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntrc-like two-domain protein; PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution Phyre2 PDB 3r0j chain A Region: 50 - 105 Aligned: 54 Modelled: 56 Confidence: 65.9% Identity: 6% PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis Phyre2 PDB 1ys7 chain A domain 2 Region: 53 - 105 Aligned: 51 Modelled: 53 Confidence: 63.6% Identity: 12% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 2rjn chain A Region: 50 - 105 Aligned: 54 Modelled: 56 Confidence: 63.0% Identity: 4% PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis Phyre2 PDB 1zgz chain A domain 1 Region: 53 - 105 Aligned: 51 Modelled: 53 Confidence: 60.9% Identity: 6% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1a2o chain B Region: 52 - 105 Aligned: 53 Modelled: 54 Confidence: 60.7% Identity: 11% PDB header:bacterial chemotaxis Chain: B: PDB Molecule:cheb methylesterase; PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain Phyre2 PDB 1s8n chain A Region: 53 - 105 Aligned: 52 Modelled: 53 Confidence: 60.7% Identity: 17% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1dbw chain A Region: 52 - 105 Aligned: 52 Modelled: 54 Confidence: 59.9% Identity: 13% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3hv2 chain B Region: 52 - 105 Aligned: 52 Modelled: 54 Confidence: 59.0% Identity: 6% PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5 Phyre2 PDB 1rnl chain A Region: 52 - 105 Aligned: 53 Modelled: 54 Confidence: 58.2% Identity: 8% PDB header:signal transduction protein Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl; PDBTitle: the nitrate/nitrite response regulator protein narl from narl Phyre2 PDB 3t6k chain B Region: 52 - 105 Aligned: 52 Modelled: 54 Confidence: 57.9% Identity: 10% PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution Phyre2 PDB 1kgs chain A Region: 53 - 105 Aligned: 51 Modelled: 53 Confidence: 57.8% Identity: 8% PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima Phyre2 1 c3cniA_ 2 d2p0sa1 3 c3eulB_ 4 c2gwrA_ 5 d1heya_ 6 d1p6qa_ 7 c3cg4A_ 8 d2ayxa1 9 c3fkqA_ 10 c3r0jA_ 11 d1ys7a2 12 c2rjnA_ 13 d1zgza1 14 c1a2oB_ 15 d1s8na_ 16 d1dbwa_ 17 c3hv2B_ 18 c1rnlA_ 19 c3t6kB_ 20 c1kgsA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3cniA_ 99.3 13 PDB header:transport protein Chain: A: PDB Molecule:putative abc type-2 transporter; PDBTitle: crystal structure of a domain of a putative abc type-2 transporter2 from thermotoga maritima msb8 2 d2p0sa1 94.6 10 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:PG0945 N-terminal domain-like 3 c3eulB_ 79.8 11 PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis 4 c2gwrA_ 73.8 11 PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis 5 d1heya_ 72.2 9 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 6 d1p6qa_ 69.1 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 7 c3cg4A_ 67.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 8 d2ayxa1 66.0 4 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 9 c3fkqA_ 66.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntrc-like two-domain protein; PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution 10 c3r0jA_ 65.9 6 PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis 11 d1ys7a2 63.6 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 12 c2rjnA_ 63.0 4 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 13 d1zgza1 60.9 6 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 14 c1a2oB_ 60.7 11 PDB header:bacterial chemotaxis Chain: B: PDB Molecule:cheb methylesterase; PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain 15 d1s8na_ 60.7 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 16 d1dbwa_ 59.9 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 17 c3hv2B_ 59.0 6 PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5 18 c1rnlA_ 58.2 8 PDB header:signal transduction protein Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl; PDBTitle: the nitrate/nitrite response regulator protein narl from narl 19 c3t6kB_ 57.9 10 PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution 20 c1kgsA_ 57.8 8 PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima 21 c3nhmA_ not modelled 57.6 16 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from myxococcus xanthus 22 d1xhfa1 not modelled 56.5 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 23 c2oqrA_ not modelled 55.5 14 PDB header:transcription,signaling protein Chain: A: PDB Molecule:sensory transduction protein regx3; PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis 24 c1ys7B_ not modelled 54.8 12 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulatory protein prra; PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+ 25 c3nhzA_ not modelled 54.3 10 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 26 d1kgsa2 not modelled 54.2 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 27 d1jbea_ not modelled 52.9 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 28 c3lteH_ not modelled 52.8 9 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 29 c3b2nA_ not modelled 52.6 8 PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus 30 c3a0rB_ not modelled 52.5 10 PDB header:transferase Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) 31 c2qxyB_ not modelled 50.9 18 PDB header:transcription Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from thermotoga2 maritima 32 d1ny5a1 not modelled 50.2 6 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 33 d1a04a2 not modelled 48.8 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 34 c3hdgE_ not modelled 48.6 10 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 35 d1mvoa_ not modelled 48.2 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 36 c3grcD_ not modelled 47.8 8 PDB header:transferase Chain: D: PDB Molecule:sensor protein, kinase; PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666 37 c2jrlA_ not modelled 47.6 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer 38 c3cz5B_ not modelled 47.4 9 PDB header:transcription regulator Chain: B: PDB Molecule:two-component response regulator, luxr family; PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1 39 c3k2dA_ not modelled 47.1 11 PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus 40 c3breA_ not modelled 46.5 12 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: crystal structure of p.aeruginosa pa3702 41 c1zn2A_ not modelled 46.1 12 PDB header:transcription regulator Chain: A: PDB Molecule:response regulatory protein; PDBTitle: low resolution structure of response regulator styr 42 c3c3mA_ not modelled 46.0 10 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 43 c2zayA_ not modelled 45.7 14 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 44 c3c97A_ not modelled 45.6 14 PDB header:signaling protein, transferase Chain: A: PDB Molecule:signal transduction histidine kinase; PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae 45 d1mb3a_ not modelled 43.9 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 46 d1zh2a1 not modelled 42.9 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 47 c2qzjC_ not modelled 41.8 14 PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile 48 c2zwmA_ not modelled 40.1 4 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis 49 d2pl1a1 not modelled 40.0 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 50 d1dz3a_ not modelled 40.0 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 51 c3cfyA_ not modelled 39.4 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus 52 c2qv0A_ not modelled 38.4 14 PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae 53 d2a9pa1 not modelled 37.9 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 54 c2qr3A_ not modelled 36.8 6 PDB header:transcription Chain: A: PDB Molecule:two-component system response regulator; PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis 55 c1ny5A_ not modelled 36.8 6 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state 56 d1krwa_ not modelled 36.7 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 57 d1w25a1 not modelled 36.5 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 58 c3i42A_ not modelled 36.0 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 59 d1a2oa1 not modelled 35.0 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 60 d1yioa2 not modelled 34.9 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 61 d1peya_ not modelled 34.6 6 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 62 c3cnbC_ not modelled 34.1 19 PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h 63 c2ayxA_ not modelled 33.3 7 PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain 64 d1zesa1 not modelled 33.3 2 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 65 c3n53B_ not modelled 30.3 10 PDB header:transcription Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase; PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus 66 c2j48A_ not modelled 29.2 8 PDB header:transferase Chain: A: PDB Molecule:two-component sensor kinase; PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein. 67 c3eq2A_ not modelled 29.0 6 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb 68 c1w25B_ not modelled 28.8 8 PDB header:signaling protein Chain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp 69 c3ir1F_ not modelled 28.5 6 PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis 70 c3gl9B_ not modelled 28.4 13 PDB header:signaling protein Chain: B: PDB Molecule:response regulator; PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism 71 c3t8yA_ not modelled 28.4 11 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb 72 d1xs5a_ not modelled 27.9 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 73 c3c3wB_ not modelled 27.9 14 PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr 74 c3ktoA_ not modelled 26.6 6 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein2 from pseudoalteromonas atlantica 75 c3gt7A_ not modelled 26.6 8 PDB header:hydrolase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus 76 d1v95a_ not modelled 23.9 11 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 77 c3i5aA_ not modelled 21.6 14 PDB header:signaling protein Chain: A: PDB Molecule:response regulator/ggdef domain protein; PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae 78 c3on1A_ not modelled 21.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2414 protein; PDBTitle: the structure of a protein with unknown function from bacillus2 halodurans c 79 c2jk1A_ not modelled 20.0 8 PDB header:dna-binding Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1; PDBTitle: crystal structure of the wild-type hupr receiver domain 80 d1qkka_ not modelled 19.8 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 81 c3rqiA_ not modelled 19.3 10 PDB header:transcription Chain: A: PDB Molecule:response regulator protein; PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate 82 d2cvoa1 not modelled 19.2 8 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 83 d2q49a1 not modelled 18.6 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 84 c3f6cB_ not modelled 18.4 8 PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli 85 c2ixaA_ not modelled 17.9 10 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase 86 c3mwbA_ not modelled 17.8 11 PDB header:lyase Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of prephenate dehydratase in complex with l-phe2 from arthrobacter aurescens to 2.0a 87 c1p99A_ not modelled 17.2 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg110; PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus 88 d1p99a_ not modelled 17.2 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 89 d1hsla_ not modelled 17.1 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 90 c3kyiB_ not modelled 16.9 19 PDB header:transferase Chain: B: PDB Molecule:chey6 protein; PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides 91 c3snkA_ not modelled 16.1 10 PDB header:signaling protein Chain: A: PDB Molecule:response regulator chey-like protein; PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution 92 c3luaA_ not modelled 15.9 8 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum 93 c3h1gA_ not modelled 15.7 13 PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis protein chey homolog; PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori 94 c3hdvB_ not modelled 15.1 18 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida 95 d1u0sy_ not modelled 14.4 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 96 c3gxaA_ not modelled 14.0 6 PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 97 c2hqrA_ not modelled 13.8 12 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 98 c3g41A_ not modelled 13.8 26 PDB header:transport protein Chain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding PDBTitle: the structure of cpn0482, the arginine binding protein from the2 periplasm of chlamydia pneumoniae 99 d1yl7a1 not modelled 13.7 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0