Job Description P0AFQ2 Confidence 47.10% Date Thu Jan 5 11:26:57 GMT 2012 Rank 39 Aligned Residues 82 % Identity 11% Template c3k2dA_ PDB info PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus Resolution 2.60 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		N	L	D	S	S	K	L	R	V	G	I	L	L	E	Q	R	S	E	A	A	L	D	F	T	H	T	M	.	.	T	G	S	P	Y	I	D	A	T	I	S	D	N	R	Q	E	L	I	A	K	M	Q	A	G	K	I	R	G	L	V	V	I	P	V	D	F	A	E	Q	M	E	R	A	N	A	T	A	P	I	Q	V
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		H	M	D	T	S	K	V	K	V	G	V	M	A	G	A	E	A	Q	V	A	E	V	A	A	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	T	F	T	D	Y	V	T	P	N	A	A	L	D	D	G	S	I	D	M	N	A	F	Q	H	K	P	Y	L	D	R	Q	V	E	D	R	D	Y	K	L	T	I	A
Template Known Secondary structure			S											T	T																											S		T	T	S								T	S		S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		126	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N	T	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions