 |
Job Description | P76278 | Confidence | 1.74% | Date | Thu Jan 5 12:21:32 GMT 2012 |
Rank | 80 | Aligned Residues | 92 |
% Identity | 12% | Template | d1q90b_ |
SCOP info | Heme-binding four-helical bundle
| Transmembrane di-heme cytochromes
| Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
|
Resolution | 3.10 |
|
 |
  |   |
190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | 220 | . | . | . | . | . | . | . | . | . | 230 | |
. | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | S | W | C | G | H | F | A | V | I | G | V | L | A | S | G | V | L | N | A | L | L | I | T | G | F | P | P | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
L | T | T | Y | W | G | Q | L | L | L | L | K | . |
A | I | L | V | M | I | M | V | V | I | A | L | A | N | R | Y | V | L | V | P | R | M | R | Q | D | E | D | R | A |
Query Conservation |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
| . | . | . | . | . | . | . | . | . |   |   |
|   |
|
|   |
|
|
|   |
| . |
|   |
|
|   |   |
|
|   |
|
|
|   |
|
|   |   |
|   |
|   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |   |   |   |   |   |
|
|
|
|
|
|
|   |
|   |   |   |
|   |
|   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |
|
|
|   |
|
|   |   |
|
|
|   |
|   |   |   |   |   |
|
|
|   |
|   | . | . | . |   |   |   |
|   |
|
|   |
Template Sequence |   |
I | G | G | I | T | F | T | C | F | L | V | Q | V | A | T | G | F | A | M | T | F | Y | Y | R | P | T | V | A | E | A | F | A | S | V | Q | Y | I | M | T | D | V | N | F | G | W | L | I | R | S | I | H | R | W | S | A | S | M | M | V | L | M | M | V | L | H | V | F | R | V | . |
. |
. |
Y | L | T | G | G | F | K | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|
| S | T | T | T |  |  |  |  |  |  |  |  |  |  | T | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  | T | T | T | T | T | S | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
36 | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | |
|
|
. | . | . | . | . | 110 | . | . |
  |
  |   |
260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | P | W | F | V | W | M | T | K | L | E | W | A | I | G | A | V | V | L | V | I | I | S | L | L |
Query Conservation |   |
  |   |   |
|   |
|   |
|   |   |
|   |   |
|   |   |   |
|
|   |   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |
|   |   |
|
|   |
|   |   |
|   |   |   |   |
|
|
|
|
|   |
Template Sequence |   |
P | R | E | L | T | W | V | T | G | V | I | M | A | V | C | T | V | S | F | G | V | T | G | Y | S |
Template Known Secondary structure |   |
S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
113 | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|