 |
Job Description | P76278 | Confidence | 1.85% | Date | Thu Jan 5 12:21:32 GMT 2012 |
Rank | 65 | Aligned Residues | 92 |
% Identity | 10% | Template | c2qjkM_ |
PDB info |
PDB header:electron transport | Chain: M: PDB Molecule:cytochrome b; |
PDBTitle: crystal structure analysis of mutant rhodobacter2 sphaeroides bc1 with stigmatellin and antimycin
|
Resolution | 3.10 Å |
|
 |
  |   |
190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | 220 | . | . | . | . | . | . | . | . | . | 230 | |
. | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | S | W | C | G | H | F | A | V | I | G | V | L | A | S | G | V | L | N | A | L | L | I | T | G | F | P | P | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
L | T | T | Y | W | G | Q | L | L | L | L | K | . |
A | I | L | V | M | I | M | V | V | I | A | L | A | N | R | Y | V | L | V | P | R | M | R | Q | D | E | D | R | A |
Query Conservation |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
| . | . | . | . | . | . | . | . | . |   |   |
|   |
|
|   |
|
|
|   |
| . |
|   |
|
|   |   |
|
|   |
|
|
|   |
|
|   |   |
|   |
|   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |   |   |   |   |   |
|
|
|
|
|
|
|   |
|   |   |   |
|   |
|   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |
|
|
|   |   |
|   |   |
|
|
|   |   |   |   |   |   |   |
|
|   |   |
|   | . | . | . |   |   |   |
|   |
|   |   |
Template Sequence |   |
W | G | V | V | L | A | F | C | L | V | L | Q | I | V | T | G | I | V | L | A | M | H | Y | T | P | H | V | D | L | A | F | A | S | V | E | H | I | M | R | N | V | N | G | G | F | M | L | R | Y | L | H | A | N | G | A | S | L | F | F | I | A | V | Y | L | H | I | F | R | G | . |
. |
. |
L | Y | Y | G | S | Y | K | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  | T | T | T | T | S | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
47 | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | |
|
|
. | . | . | . | 120 | . | . | . |
  |
  |   |
260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | P | W | F | V | W | M | T | K | L | E | W | A | I | G | A | V | V | L | V | I | I | S | L | L |
Query Conservation |   |
  |   |   |
|   |
|   |
|   |   |
|   |   |
|   |   |   |
|
|   |   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |
|   |   |
|
|   |
|   |   |
|   |
|   |   |
|
|   |
|
|   |
Template Sequence |   |
P | R | E | V | T | W | I | V | G | M | L | I | Y | L | A | M | M | A | T | A | F | M | G | Y | V |
Template Known Secondary structure |   |
T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|