Job Description P77585 Confidence 100.00% Date Thu Jan 5 12:30:48 GMT 2012 Rank 10 Aligned Residues 327 % Identity 13% Template c3tx8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a succinyl-diaminopimelate desuccinylase (arge)2 from corynebacterium glutamicum atcc 13032 at 2.97 a resolution Resolution 2.97 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.																															.	.
Query SS confidence																																							.	.																															.	.
Query Sequence		L	S	L	L	K	A	L	S	E	A	D	A	I	A	S	S	E	Q	E	V	R	Q	I	L	L	E	E	A	D	R	L	Q	K	E	V	R	F	.	.	D	G	L	G	S	V	L	I	R	L	N	E	S	T	G	P	K	V	M	I	C	A	H	M	D	E	V	G	F	M	.	.	V	R	S	I	S	R	E	G	A
Query Conservation																																							.	.																															.	.
Alig confidence																																							.	.																															.	.
Template Conservation
Template Sequence		I	V	L	T	Q	R	L	V	D	I	P	S	P	S	G	Q	E	K	Q	I	A	D	E	I	E	D	A	L	R	N	L	N	L	P	G	V	E	V	F	R	F	N	N	N	V	L	A	R	T	N	R	G	L	A	S	R	V	X	L	A	G	H	I	D	T	V	P	I	A	D	N	L	P	S	R	V	E	D	G	I
Template Known Secondary structure										S	S			B	T	T		T													T	T	T		T	T							T	T											S											B	S				S			S					S	S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.					.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.											.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure												.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	V	L	P	V	G	N	V	R	.	.	.	.	M	A	A	R	Q	L	Q	P	V	R	I	T	T	R	E	E	C	K	I	P	G	L	L	D	G	D	R	Q	G	N	D	V	S	.	.	.	.	.	.	.	.	.	.	A	M	R	V	D	I	G	A	R	S	Y	D	E	V	M	Q	A	G	I	R	P	G	D
Query Conservation												.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	Y	G	C	G	T	V	D	X	K	S	G	L	A	V	Y	L	H	T	F	A	T	L	A	T	S	T	E	L	K	H	D	L	T	L	I	A	Y	E	C	E	E	V	A	D	H	L	N	G	L	G	H	I	R	D	E	H	P	E	W	L	A	A	D	L	A	L	L	G	E	P	T	G	G	W	I	E	A	G	C
Template Known Secondary structure				S	S	S	T	T	T	T															T	S		T	T			S											S	S		T	T	S											G	G	G	G			S									T	T					S	B
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		R	V	T	F	D	T	T	F	Q	V	L	P	H	Q	R	V	M	G	K	A	F	D	D	R	L	G	C	Y	L	L	V	T	L	L	R	E	L	H	D	A	E	L	P	.	.	A	E	V	W	L	V	A	S	S	S	E	E	V	G	L	R	G	G	Q	T	A	T	R	A	V	S	P	D	V	A	I	V	L	D	T
Query Conservation																																													.	.
Alig confidence																																													.	.
Template Conservation
Template Sequence		Q	G	N	L	R	I	K	V	T	A	H	G	V	R	A	H	S	A	R	S	W	L	G	D	N	A	X	H	K	L	S	P	I	I	S	K	V	A	A	Y	K	A	A	E	V	N	I	D	G	L	T	Y	R	E	G	L	N	I	V	F	C	E	S	G	V	A	N	N	V	I	P	D	L	A	W	X	N	L	N	F
Template Known Secondary structure														B			B	T	T	S	G	G	G	S	B		T	G	G	G	G																		T	T																S	B	T	T	B			S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.							.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.
Query Sequence		A	C	W	A	K	N	F	D	Y	G	A	A	N	H	R	Q	.	.	.	.	.	.	I	G	N	G	P	M	L	V	L	S	D	K	S	L	I	A	P	P	K	L	T	A	W	V	E	T	V	A	A	E	I	G	V	P	L	Q	A	D	M	F	S	N	G	G	T	D	G	G	A	V	H	L	T	G	T	G	V	P
Query Conservation																		.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																																									.													.	.
Template Conservation																																																																.													.	.
Template Sequence		R	F	A	P	N	R	D	L	N	E	A	I	E	H	V	V	E	T	L	E	L	D	G	Q	D	G	I	E	W	A	V	E	D	G	A	G	G	A	L	P	G	L	G	Q	Q	V	T	S	G	L	I	D	A	V	G	R	E	K	I	R	A	K	.	F	G	W	T	D	V	S	R	F	S	A	X	.	.	G	I	P
Template Known Secondary structure					T	T	S													T	T	T	T	T	S	T	T												B				T	T	S												G	G	G					.		S			T						T	T	.	.	T
Template Predicted Secondary structure																																																																.													.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.			330	.	.
		297	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		T	V	V	M	G	P	.	A	T	R	H	G	H	C	A	A	S	I	A	D	C	R	D	I	L	Q	M	Q	Q	L	L	S	A	L	I	Q	R
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		A	L	N	F	G	A	G	D	P	S	F	A	H	K	R	D	E	Q	C	P	V	E	Q	I	T	D	V	A	A	I	L	K	Q	Y	L	S	E
Template Known Secondary structure							S	S		S	S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions