Job Description P77585 Confidence 100.00% Date Thu Jan 5 12:30:48 GMT 2012 Rank 14 Aligned Residues 331 % Identity 12% Template c3pfoB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:putative acetylornithine deacetylase; PDBTitle: crystal structure of a putative acetylornithine deacetylase (rpa2325)2 from rhodopseudomonas palustris cga009 at 1.90 a resolution Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																							.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query Sequence		L	S	L	L	K	A	L	S	E	A	D	A	I	A	S	S	E	Q	E	V	R	Q	I	L	L	E	E	A	D	R	L	Q	K	E	V	R	F	D	G	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	L	I	R	L	N	E	.	S	T	G	P	K	V	M	I
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation
Template Sequence		V	A	F	L	Q	R	X	V	Q	F	R	S	V	R	G	E	E	A	P	Q	Q	E	W	L	A	Q	Q	F	A	D	R	G	Y	K	V	D	T	F	S	L	A	D	V	D	I	A	S	H	P	K	A	A	P	X	D	T	I	D	P	A	G	S	X	Q	V	V	A	T	A	D	S	D	G	K	G	R	S	L	I	L
Template Known Secondary structure										T	S				T	T																T	T								T	T	T	T	T	G	G	G	S	T	T					T	T			G	G	G													S	S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		60	.	.	.	.	.	.	.	.	.										70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.																								.
Query SS confidence												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.																								.
Query Sequence		C	A	H	M	D	E	V	G	F	M	.	.	.	.	.	.	.	.	.	V	R	S	I	S	R	E	G	A	I	D	V	L	P	V	G	N	V	R	M	A	A	R	Q	L	Q	P	V	R	I	T	T	.	.	.	.	.	R	E	E	C	K	I	P	G	L	L	D	G	D	R	Q	G	N	D	V	S	A	M	R	.
Query Conservation												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.																								.
Alig confidence												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.																								.
Template Conservation
Template Sequence		Q	G	H	I	D	V	V	P	E	G	P	V	D	L	W	S	D	P	P	Y	E	A	K	V	R	D	G	W	X	I	G	R	G	A	Q	D	X	K	G	G	V	S	A	X	I	F	A	L	D	A	I	R	T	A	G	Y	A	P	D	A	R	V	H	V	Q	T	V	T	E	E	E	S	T	G	N	G	A	L	S	T
Template Known Secondary structure													G	G	G		S	S		T	T	T					T	T					T	T	T	T	T	T																	T	T				S	S								S		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
						125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.										.	.	.	.	190	.
Predicted Secondary structure		.	.	.	.																																																														.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																														.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	V	D	I	G	A	R	S	Y	D	E	V	M	Q	A	G	I	R	P	G	D	R	V	T	F	D	T	T	F	Q	V	L	P	H	Q	R	V	M	G	K	A	F	D	D	R	L	G	C	Y	L	L	V	T	L	L	R	E	L	H	D	A	E	.	.	.	.	.	.	.	.	.	L	P	A	E	V	W
Query Conservation		.	.	.	.																																																														.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	X	R	G	Y	R	A	D	A	C	L	I	P	E	P	T	G	H	T	L	T	R	A	Q	V	G	A	V	W	F	R	L	R	V	R	G	T	P	V	H	V	A	Y	S	E	T	G	T	S	A	I	L	S	A	X	H	L	I	R	A	F	E	E	Y	T	K	E	L	N	A	Q	A	V	R	D	P	W	F	G	Q
Template Known Secondary structure					T				S									S	S																						B	G	G	G	G	G	G	S																									G	G	G	S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.														.	240	.	.	.	.	.	.	.	.						.	250	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Query Sequence		L	V	A	S	S	S	E	E	V	G	L	R	G	G	Q	T	A	T	R	A	V	S	P	D	V	A	I	V	L	D	T	A	C	W	A	K	N	F	D	Y	G	A	A	N	H	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	N	G	P	M	L	V	L	S	.	.	.	.	.	D	K	S	L	I
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Template Conservation
Template Sequence		V	K	N	P	I	K	F	N	V	G	I	I	K	G	G	D	W	A	S	S	T	A	A	W	C	E	L	D	C	R	L	G	L	L	T	G	D	T	P	Q	E	A	X	R	G	I	E	K	C	L	A	D	A	Q	A	T	D	S	F	L	S	E	N	P	A	E	L	V	W	S	G	F	Q	A	D	P	A	V	C	E
Template Known Secondary structure		S	S	S													S		T	T	B															T	T																			T	T							S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	P	K	L	T	A	W	V	E	T	V	A	A	E	I	G	V	P	L	Q	A	D	M	F	S	N	G	G	T	D	G	G	A	V	H	L	T	G	T	G	V	P	T	V	V	M	G	P	A	T	R	H	G	H	C	A	A	S	I	A	D	C	R	D	I	L	Q	M	Q	Q	L	L	S	A	L	I	Q	R	L
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence		P	G	G	V	A	E	D	V	L	T	A	A	H	K	A	A	F	N	A	P	L	D	A	R	L	S	T	A	V	N	D	T	R	Y	Y	S	V	D	.	Y	G	I	P	A	L	C	Y	G	P	Y	G	Q	G	P	H	A	F	D	E	R	I	D	L	E	S	L	R	K	T	T	L	S	I	A	L	F	V	A	E	W
Template Known Secondary structure		T	T																S	S								S	S			T								.															T	T	S	T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		334
Predicted Secondary structure
Query SS confidence
Query Sequence		T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		427

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions