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Job DescriptionP77585
Confidence100.00%DateThu Jan 5 12:30:48 GMT 2012
Rank31Aligned Residues334
% Identity9%Templatec3pfeA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a m20a metallo peptidase (dape, lpg0809) from2 legionella pneumophila subsp. pneumophila str. philadelphia 1 at 1.503 a resolution
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10...... ...20.........30.........40. ........50.........60.....
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Query Sequence  LSLLKALSEADAIA. . . . . . . . . . SSEQEVRQILLEEADRLQKEVRFDG. . . . . . . LGSVLIRLNESTGPKVMICAHMDE
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Template Sequence  LPSLCDYIKIPNKSPHFDAKWEEHGYXEQAVNHIANWCKSHAPKGXTLEIVRLKNRTPLLFXEIPGQIDDTVLLYGHLDK
Template Known Secondary structure  T


B
GGG
TT
T

TT


TTS



S

B
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   20.........30.........40.........50.........60.........70.........80.........90.........
 
   66... 70.........80........ .90.........100.........110.........120...
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Query Sequence  VGFM. . . . . . . . . VRSISREGAIDVLPVGNVR. . . . MAARQLQPVRITTREECKIPGLLDGDRQGNDVSAM. . . . . . . . .
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Template Sequence  QPEXSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIELLKER
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S


TT
BTTB
TTSTT




TT


S
GGGTSTT
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   100.........110.........120.........130.........140.........150.........160.........170.........
 
   124.....130.........140.........150...... ...160........ .170.........180.........190.
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Query Sequence  . . . . . RVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLP. . HQRVMGKAFDDR. LGCYLLVTLLRELHDAELPAEVW. . . .
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Template Sequence  IGKPSLVICLDSGAGNYEQLWXTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQLY
Template Known Secondary structure 


S

B
S
SSS

S
SS
B
TTTS

B
TTT

B

GGG
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   180.........190.........200.........210.........220.........230.........240.........250.........
 
   192.......200.........210.........220..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LVASSSEEVGLRGGQTATRAVSPDVAIVLDT
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Template Sequence  CDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVXRPVTSLKLSX
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GGGGTTTS


TT


S
S
TS
S


TTT

S
B
S
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   260.........270.........280.........290.........300.........310.........320.........330.........
 
   223......230........ .240.........250.... .....260.........270.........280..... ..
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Query Sequence  ACWAKNFDYGAANHRQ. . . . . . . . IGNGPMLVLSDKSLIA. . . . . . PPKLTAWVETVAAEIGVPLQADMFSNGGTDG. GA
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Template Sequence  RLPPLVDPEAASVAXEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASXTYYDKPAAYXGEGGTIPFXSX
Template Known Secondary structure 
TT

SS
GGG

S

B






SS

SS

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   340.........350.........360.........370.........380.........390.........400.........410.........
 
   288.290.........300.... .....310.........320.........330......
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Query Sequence  VHLTGTGVPTVVMGPAT. . RHGHCAASIADCRDILQMQQLLSALIQRLTRE
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Template Sequence  LGEQFPKAQFXITGVLGPHSNAHGPNEFLHLDXVKKLTSCVSYVLYSFSQK
Template Known Secondary structure 
TT


B
TT

TTSTT

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   420.........430.........440.........450.........460.........470
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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