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Job DescriptionP77585
Confidence100.00%DateThu Jan 5 12:30:48 GMT 2012
Rank16Aligned Residues335
% Identity16%Templatec3mruB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:aminoacyl-histidine dipeptidase; PDBTitle: crystal structure of aminoacylhistidine dipeptidase from vibrio2 alginolyticus
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.. .......60.........
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Query Sequence  LSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGSVLIRLNES. . . . TGPKVMICAHMDEVGFM. . . . . . . . .
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Template Sequence  WQFFDKICSIPHPSKHEEALAQYIVTWATEQGFDVRRDPTGNVFIKKPATPGMENKKGVVLQAHIDMVPQKNEDTDHDFT
Template Known Secondary structure  TTS

BTT

TTTT


TTS



SS

SB



B


B
SS



TT
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   17..20.........30.........40.........50.........60.........70.........80.........90......
 
   70.........80..... ....90.........100. ........110.........120.........130.....
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Query Sequence  . . . VRSISREGAIDVLPVG. . . NVRMAARQLQPVRITT. REECKIPGLLDGDRQGNDVSAMRVDIGARSYDEV. . . . . . .
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Template Sequence  QDPIQPYIDGEWVTAKGTTLGADNGIGMASCLAVLASKEIKHGPIEVLLTIDEEAGMTGAFGLEAGWLKGDILLNTDSEQ
Template Known Secondary structure  TS


TTSSB


T
SS


S
S
SSSTTS

TTS


S




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   97..100.........110.........120.........130.........140.........150.........160.........170......
 
   136...140.........150...... ...160........ .170.........180.
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Query Sequence  . . . . . . . . . . . . . . . . . MQAGIRPGDRVTFDTTFQVLP. HQRVMGKAFDDR. . LGCYLLVTLLREL. . . . . . . . . . . . . .
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Template Conservation                       
     
     
 
 
    
          


   
     
              
Template Sequence  EGEVYMGCAGGIDGAMTFDITRDAIPAGFITRQLTLKGLKGGHSGCDIHTGRGNANKLIGRFLAGHAQELDLRLVEFRGG
Template Known Secondary structure  TT





TT




BTTTGGGS



T

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   177..180.........190.........200.........210.........220.........230.........240.........250......
 
   182.......190
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HDAELPAEV
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Template Conservation       

                                                                         
Template Sequence  SLRNAIPREAFVTVALPAENQDKLAELFNYYTELLKTELGKIETDIVTFNEEVATDAQVFAIADQQRFIAALNACPNGVM
Template Known Secondary structure  S
TTB



GGGTTT






S

S

S

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   257..260.........270.........280.........290.........300.........310.........320.........330......
 
   191........200.........210.........220.........230........ .240.........250.........260...
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Query Sequence  WLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQ. . . . . . . IGNGPMLVLSDKSLIAPPKLTAWVE
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Template Conservation                                  
             
          
                

  
 
Template Sequence  RMSDEVEGVVETSLNVGVITTEENKVTVLCLIRSLIDSGRSQVEGMLQSVAELAGAQIEFSGAYPGWKPDADSEIMAIFR
Template Known Secondary structure 
SSSTT
TTSSTT


B


SS
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   337..340.........350.........360.........370.........380.........390.........400.........410......
 
   264.....270.........280.........290.........300.........310.........320.........330.......
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Query Sequence  TVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIQRLTRET
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Template Sequence  DMYEGIYGHKPNIMVIHAGLECGLFKEPYPNMDMVSFGPTIKFPHSPDEKVKIDTVQLFWDQMVALLEAIPEKA
Template Known Secondary structure  TTTTTT

S

SS

GGGGGGSSSS





STTSTT
T

B

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   417..420.........430.........440.........450.........460.........470.........480.........490
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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