Job Description P77585 Confidence 100.00% Date Thu Jan 5 12:30:48 GMT 2012 Rank 25 Aligned Residues 325 % Identity 14% Template c3ic1A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase2 from haemophilus influenzae Resolution 2.30 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.										70
Predicted Secondary structure																																											.	.	.																											.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.																											.	.	.	.	.	.	.	.	.
Query Sequence		L	S	L	L	K	A	L	S	E	A	D	A	I	A	S	S	E	Q	E	V	R	Q	I	L	L	E	E	A	D	R	L	Q	K	E	V	R	F	D	G	L	G	.	.	.	S	V	L	I	R	L	N	E	S	T	G	P	K	V	M	I	C	A	H	M	D	E	V	G	F	M	.	.	.	.	.	.	.	.	.	V
Query Conservation																																											.	.	.																											.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.											.																.	.	.	.	.	.	.	.	.
Template Conservation																																																								.
Template Sequence		V	S	L	A	Q	D	L	I	R	R	P	S	I	S	P	N	D	E	G	C	Q	Q	I	I	A	E	R	L	E	K	L	G	F	Q	I	E	W	M	P	F	N	D	T	L	N	L	W	A	K	H	G	T	S	E	.	P	V	I	A	F	A	G	H	T	D	V	V	P	T	G	D	E	N	Q	W	S	S	P	P	F
Template Known Secondary structure										T	S			B	T	T			T	T											T	T	T								B	T	T	B								S	S	S	S	.	S										B						G	G	G		S	S		T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																.	.	.	.	.	.	130
Predicted Secondary structure																													.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	S	I	S	R	E	G	A	I	D	V	L	P	V	G	N	V	R	M	A	A	R	Q	L	Q	P	V	.	.	.	.	.	R	I	T	T	R	E	E	C	K	I	P	G	L	L	D	G	D	R	Q	G	N	D	V	S	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	D	I	G	A	R
Query Conservation																													.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	E	I	I	D	G	M	L	Y	G	R	G	A	A	D	M	K	G	S	L	A	A	M	I	V	A	A	E	E	Y	V	K	A	N	P	N	H	K	G	T	I	A	L	L	I	T	S	D	E	E	A	T	A	K	D	G	T	I	H	V	V	E	T	L	M	A	R	D	E	K	I	T	Y	C	M	V	G	E	P
Template Known Secondary structure		T					T	T				S	T	T	T	T	T	T																			T	T		S	S								S		S	S	S			S	S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	D	E	V	M	Q	A	G	I	R	P	G	D	R	V	T	F	D	T	T	F	Q	V	L	P	H	Q	R	V	M	G	K	A	F	D	D	R	L	G	C	Y	L	L	V	T	L	L	R	E	L	H	D	A	E	L	P	A	E	V	W	L	V	A	S	S	S	E	E	V	G	L	R	G	G	Q	T	A	T	R
Query Conservation
Alig confidence																																		.	.	.	.																																							.
Template Conservation																																		.	.	.	.																																							.
Template Sequence		S	S	A	K	N	L	G	D	V	V	K	N	G	R	R	G	S	I	T	G	N	L	Y	I	Q	G	I	Q	Y	P	H	L	.	.	.	.	A	E	N	P	I	H	K	A	A	L	F	L	Q	E	L	T	T	Y	Q	W	D	K	G	N	E	F	F	P	P	T	S	L	Q	I	A	N	I	H	.	A	G	T	G	S
Template Known Secondary structure			B	S	S	S	T	T	S																									.	.	.	.	T	T																						B	T	T	B												.
Template Predicted Secondary structure																																		.	.	.	.																																							.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.						.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																														.	.	.	.	.																	.	.	.
Query SS confidence																														.	.	.	.	.																	.	.	.
Query Sequence		A	V	S	P	D	V	A	I	V	L	D	T	A	C	W	A	K	N	F	D	Y	G	A	A	N	H	R	Q	.	.	.	.	.	I	G	N	G	P	M	L	V	L	S	D	K	S	L	I	A	.	.	.	P	P	K	L	T	A	W	V	E	T	V	A	A	E	I	G	V	P	L	Q	A	D	M	F	S	N	G	G
Query Conservation																														.	.	.	.	.																	.	.	.
Alig confidence																														.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		V	I	P	A	E	L	Y	I	Q	F	N	L	R	Y	C	T	E	V	T	D	E	I	I	K	Q	K	V	A	E	M	L	E	K	H	N	L	K	Y	R	I	E	W	N	L	S	G	K	P	F	L	T	K	P	G	K	L	L	D	S	I	T	S	A	I	E	E	T	I	G	I	T	P	K	A	E	T	G	G	G	T
Template Known Secondary structure					S												T	T	S																T	T																		S	S															S										S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	G	G	A	V	H	L	T	G	T	G	V	P	T	V	V	M	G	P	A	T	R	H	G	H	C	A	A	S	I	A	D	C	R	D	I	L	Q	M	Q	Q	L	L	S	A	L	I	Q	R	L	T	R
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		S	D	G	R	.	.	F	I	A	L	M	G	A	E	V	V	E	F	G	P	L	N	S	T	I	H	K	V	N	E	C	V	S	V	E	D	L	G	K	C	G	E	I	Y	H	K	M	L	V	N	L	L	D
Template Known Secondary structure			S			.	.			G	G	G	T								S	B		T	T	T	T	S	T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		326	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions