Job Description P77585 Confidence 99.83% Date Thu Jan 5 12:30:48 GMT 2012 Rank 58 Aligned Residues 320 % Identity 19% Template c2gljR_ PDB info PDB header:hydrolase Chain: R: PDB Molecule: PDBTitle: crystal structure of aminopeptidase i from clostridium2 acetobutylicum Resolution 3.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		S	L	L	K	A	L	S	E	A	D	A	I	A	S	S	E	Q	E	V	R	Q	I	L	L	E	E	A	D	R	L	Q	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	F	D	G	L	G	S	V	L	I	R	L	N	E	S	T	G	P	K	.	.	.	V	M	I	C	A	H
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Alig confidence														.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation														.	.	.	.
Template Sequence		R	F	K	N	F	I	S	N	C	K	T	E	.	.	.	.	R	E	C	V	T	E	L	I	K	T	A	E	K	S	G	Y	R	N	I	E	D	I	L	A	K	G	E	T	L	K	E	G	D	K	V	Y	A	N	N	R	G	K	G	L	I	M	F	L	I	G	K	E	P	L	Y	T	G	F	K	I	L	G	A	H
Template Known Secondary structure														.	.	.	.	S	S	T								S			S	S				T	T				S	T	T	T	T			T	T								T	T	T									S	S		G	G	G
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.					.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.						.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																.	.	.	.	.																										.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.																										.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	D	E	V	G	F	M	V	R	S	I	S	R	E	.	.	.	.	.	G	A	I	D	V	L	P	V	G	N	V	R	M	A	A	R	Q	L	Q	P	V	R	I	T	T	.	.	.	.	R	E	E	C	K	I	P	G	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.	.	.	.																										.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.																										.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	S	P	R	L	D	L	K	Q	N	P	L	Y	E	D	T	D	L	A	M	L	E	T	H	Y	Y	G	G	I	K	K	Y	Q	W	V	T	L	P	L	A	I	H	G	V	I	V	K	K	D	G	T	I	V	N	V	C	V	G	E	D	D	N	D	P	V	F	G	V	S	D	I	L	V	H	L	A	S	E	Q
Template Known Secondary structure						B	B				S	S						S	S	S								B	S				S				S	S	S											T	T								B	S		S	T	T	S			B							G	G	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
				112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.																.	.	.	.	.	140	.	.	.	.	.	.	.	.	.									150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure		.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query SS confidence		.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query Sequence		.	.	D	G	D	R	Q	G	N	D	V	S	A	M	R	V	D	I	G	A	R	S	Y	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	M	Q	A	G	I	R	P	G	D	R	V	T	F	D	.	.	.	.	.	.	.	.	T	T	F	Q	V	L	P	H	Q	R	V	M	G	K	A	F	D
Query Conservation		.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Alig confidence		.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	K	K	A	S	K	V	I	E	G	E	D	L	N	I	L	I	G	S	I	P	L	K	D	G	E	E	K	Q	K	V	K	H	N	I	M	K	I	L	N	E	K	Y	D	I	S	E	E	D	F	V	S	A	E	L	E	I	V	P	A	G	K	A	R	D	Y	G	F	D	R	S	M	V	M	G	Y	G	Q	D
Template Known Secondary structure		T	S		T	T		S	S			S								S				S	T	T				S														S	S				S	T	T	G	G	G	B								S						S	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.																							.	.	.	220	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	R	L	G	C	Y	L	L	V	T	L	L	R	E	L	H	D	A	E	L	P	A	E	V	W	L	V	A	S	S	S	E	E	V	G	L	R	G	G	Q	T	A	T	R	A	V	S	P	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	V	L	D	T	A	C
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.
Template Sequence		D	R	I	C	A	Y	T	S	F	E	A	M	.	.	L	E	M	K	N	A	K	K	T	C	I	T	I	L	V	D	K	E	E	V	G	S	I	G	A	T	G	M	Q	S	K	F	F	E	N	T	V	A	D	I	M	S	D	E	L	K	L	R	K	A	L	Y	N	S	E	M	L	S	S	D	V	S	A	A	F	D
Template Known Secondary structure														.	.		T			S		S	S										G	G	G	T			T	T	T	T	S	S	S	T	T									T				S								T						B					B
Template Predicted Secondary structure														.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.							.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.						.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.																																.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.																																.	.	.	.	.
Query Sequence		W	A	K	N	F	D	Y	G	A	A	N	H	R	Q	I	G	N	G	P	M	L	V	L	.	.	.	.	.	.	S	D	K	S	L	I	A	P	P	K	L	T	A	W	V	E	T	V	A	A	E	I	G	V	P	L	Q	A	D	M	F	.	.	.	.	.	S	N	G	G	T	D	G	G	A	V	H	L	T	G	T
Query Conservation																									.	.	.	.	.	.																																.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																																.	.	.	.	.									.	.
Template Conservation																																																																											.	.
Template Sequence		P	N	Y	P	N	V	M	E	K	R	N	S	A	Y	L	G	K	G	I	V	F	N	K	Y	T	G	S	R	G	K	S	G	C	N	D	A	N	P	E	Y	I	A	E	L	R	R	I	L	S	K	E	S	V	N	W	Q	T	A	E	L	G	K	V	D	Q	G	G	G	G	T	I	A	Y	.	.	I	L	A	E	Y
Template Known Secondary structure		T	T			T	T	S		S	T	T	S	B		T	T	S					B	S				S	T	T	S		S	S																		T									S	S	S	S	S	S	S					T			.	.				T	T
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.			.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	P	T	V	V	M	G	P	A	T	R	H	G	H	C	A	A	S	I	A	D	C	R	D	I	L	Q	M	Q	Q	L	L	S	A	L	I	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	M	Q	V	I	D	C	G	V	A	L	L	N	X	H	A	P	W	E	I	S	S	K	A	D	I	Y	E	T	K	N	G	Y	S	A	F	L	N
Template Known Secondary structure		T		B			B	B						S	T	T	S	S	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions