Job Description P77585 Confidence 99.94% Date Thu Jan 5 12:30:48 GMT 2012 Rank 49 Aligned Residues 325 % Identity 19% Template c2glfB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable m18-family aminopeptidase 1; PDBTitle: crystal structure of aminipeptidase (m18 family) from thermotoga2 maritima Resolution 2.80 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.															.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence		S	L	L	K	A	L	S	E	A	D	A	I	A	S	S	E	Q	E	V	R	Q	I	L	L	E	E	A	D	R	L	Q	K	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	D	G	L	G	S	V	L	I	R	L	N	E	S	T	G	P	K	.	.	V	M	I	C	A	H	M	D	E	V	G
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		A	F	S	K	E	Y	X	E	F	X	S	K	A	K	T	E	R	X	T	V	K	E	I	K	R	I	L	D	E	S	G	F	V	P	L	E	D	F	A	G	D	P	X	N	X	T	V	Y	A	V	N	R	G	K	A	I	A	A	F	R	V	V	D	D	L	K	R	G	L	N	L	V	V	A	H	I	D	S	P	R
Template Known Secondary structure												T	T		S	S															T	T				G	G	G			S		T	T	S							S	S	S	S									S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		68	.	70	.				.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.							.	.																									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.							.	.																									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	M	V	R	.	.	.	S	I	S	R	E	G	.	.	A	I	D	V	L	P	V	G	N	V	R	M	A	A	R	Q	L	Q	P	V	R	I	T	T	.	.	.	.	R	E	E	C	K	I	P	G	L	L	D	G	D	R	Q	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.	.							.	.																									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.							.	.																									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	F	K	P	N	P	L	I	E	D	E	Q	I	A	L	F	K	T	H	Y	Y	G	G	I	K	K	Y	H	W	L	S	I	P	L	E	I	H	G	V	L	F	K	N	D	G	T	E	I	E	I	H	I	G	D	K	P	E	D	P	V	F	T	I	P	D	L	L	P	H	L	D	K	E	D	A	K	I	S	E
Template Known Secondary structure												S	S	S										S	S			G	G	G	G	T	T	S											T	T	S								S	S	S	T	T	S			B							T	T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
				119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.															.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.									.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure		.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Query SS confidence		.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Query Sequence		.	.	D	V	S	A	M	R	V	D	I	G	A	R	S	Y	D	E	V	M	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	I	R	P	G	D	R	V	T	F	D	T	T	F	Q	V	L	P	H	Q	.	.	.	.	.	.	.	.	R	V	M	G	K	A	F	D	D	R	L	G	C	Y	L	L
Query Conservation		.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Alig confidence		.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	F	K	G	E	N	L	X	L	I	A	G	T	I	P	L	S	G	E	E	K	E	A	V	K	T	N	V	L	K	I	L	N	E	X	Y	G	I	T	E	E	D	F	V	S	G	E	I	E	V	V	P	A	F	S	P	R	E	V	G	X	D	R	S	L	I	G	A	Y	G	Q	D	D	R	I	C	A	Y	T	A
Template Known Secondary structure		S	S		G	G	G											T	T		S	S																			G	G	G	G	T	T															S	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.																										.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query Sequence		V	T	L	L	R	E	L	H	D	A	E	L	P	A	E	V	W	L	V	A	S	S	S	E	E	V	G	L	R	G	G	Q	T	A	T	R	A	V	S	P	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	V	L	D	T	A	C	W	A	K	.	.
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Alig confidence								.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation								.	.	.
Template Sequence		L	R	A	L	L	S	.	.	.	A	N	P	E	K	S	I	G	V	I	F	F	D	K	E	E	I	G	S	D	G	N	T	G	A	K	A	R	F	Y	L	K	A	L	R	Q	I	L	K	X	Q	G	A	K	D	S	E	F	V	L	D	E	V	L	E	N	T	S	V	I	S	G	D	V	C	A	A	V	N	P	P
Template Known Secondary structure								.	.	.				S	S								S	S	G	G	G	T	S		S	T	T	S	T	T	S	S													T	T		S	S											S														G	G
Template Predicted Secondary structure								.	.	.
Template SS confidence
		260	.	.	.	.	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
			228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250							.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure		.																								.	.	.	.	.	.																														.	.	.	.	.
Query SS confidence		.																								.	.	.	.	.	.																														.	.	.	.	.
Query Sequence		.	N	F	D	Y	G	A	A	N	H	R	Q	I	G	N	G	P	M	L	V	L	S	D	K	.	.	.	.	.	.	S	L	I	A	P	P	K	L	T	A	W	V	E	T	V	A	A	E	I	G	V	P	L	Q	A	D	M	F	S	.	.	.	.	.	N	G	G	T	D	G	G	A	V	H	L	T	G	T	G	V
Query Conservation		.																								.	.	.	.	.	.																														.	.	.	.	.
Alig confidence		.																								.	.	.	.	.	.																														.	.	.	.	.								.	.
Template Conservation																																																																									.	.
Template Sequence		Y	K	D	V	H	D	L	H	N	A	P	K	L	G	Y	G	V	A	L	V	K	Y	T	G	A	R	G	K	Y	S	T	N	D	A	H	A	E	F	V	A	R	V	R	K	V	L	N	E	Q	G	V	I	W	Q	V	A	T	L	G	K	V	D	Q	G	G	G	G	T	I	A	K	.	.	F	F	A	E	R	G	S
Template Known Secondary structure		G	G	G	G	S		G	G	G				T	T	S						S				S	T	T	T	T	T																			T	T								S	S	S	T	T	S						T			.	.				T	T	T
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.			.	.	410	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	V	V	M	G	P	A	T	R	H	G	H	C	A	A	S	I	A	D	C	R	D	I	L	Q	M	Q	Q	L	L	S	A	L	I	Q	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	I	D	X	G	P	A	L	L	G	X	H	S	P	F	E	I	S	S	K	A	D	L	F	E	T	Y	V	A	Y	R	S	L	X	E	K	L
Template Known Secondary structure											B	S	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions