Job Description P77585 Confidence 99.13% Date Thu Jan 5 12:30:48 GMT 2012 Rank 69 Aligned Residues 309 % Identity 16% Template c2ek8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase; PDBTitle: aminopeptidase from aneurinibacillus sp. strain am-1 Resolution 1.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.
Predicted Secondary structure																		.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	L	L	K	A	L	S	E	A	D	A	I	A	S	S	.	.	E	Q	E	V	R	Q	I	L	L	E	E	A	D	R	L	Q	K	E	V	R	F	D	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	N	T	I	Q	F	L	S	Q	A	P	R	V	A	G	S	P	E	E	L	K	A	V	R	Y	I	E	Q	Q	F	K	S	Y	G	Y	H	V	E	V	Q	P	F	Q	F	E	G	Y	T	A	P	S	E	V	T	L	K	I	G	T	E	K	K	E	G	E	A	F	T	Y	S	P	N	S	D	V	T	A	E	L	V
Template Known Secondary structure									T	T	S				T	T	S																	T	T																	S							T	T									B	T
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
																		43	.	.	.	.	.	.	50	.	.	.	.	.	.														.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	V	L	I	R	L	N	E	S	T	G	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	V	M	I	C	A	H	M	D	E	V	G	F	M	V	R	S	I	S	R	E	G	A	I	D	V	L	P	V	G	N	V	R	M	A	A	R	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																																																																									.
Template Sequence		Y	V	G	L	G	T	T	A	D	V	A	G	K	D	L	N	G	K	I	A	L	I	Q	R	G	N	I	S	F	A	D	K	V	R	N	A	A	K	Q	G	A	K	A	V	I	I	Y	N	N	T	D	G	K	L	N	G	T	L	G	G	S	D	A	S	F	V	A	A	V	G	I	.	T	K	Q	E	G	D	A	L
Template Known Secondary structure				T	T			T	T	T	T	T	T	S			T	T	S								S	S												T	T		S							S	S	S	S					B		S	S			T	T								.
Template Predicted Secondary structure																																																																									.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	P	V	R	I	T	T	R	E	E	C	K	I	P	G	L	L	D	G	D	R	Q	G	N	D	V	S	A	M	R	V	D	I	G	A	R	S	Y	D	E	V	M	Q	A	G	I	R	P	G	D	R	V	T	F	D	T	T	F	Q	V	L	P	H	Q	R	V	M	G	K	A	F	D	D	R	L	G	C	Y	L
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	N	L	R	A	G	E	K	I	T	A	T	V	K	V	A	G	A	E	V	K	T	L	T	S	H	N	V	I	A	T	K	K	P	D	A	N	K	K	N	T	N	D	I	I	I	I	G	S	H	H	D	.	.	.	.	.	.	.	.	.	.	S	V	E	K	A	P	G	A	N	D	D	A	S	G	V	A	V
Template Known Secondary structure							T	T											S																			S	S	T	T														.	.	.	.	.	.	.	.	.	.			T	T				T	T	T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230											.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	T	L	L	R	E	L	H	D	A	E	L	P	A	E	V	W	L	V	A	S	S	S	E	E	V	G	L	R	G	G	Q	T	A	T	R	A	V	S	P	D	V	A	I	V	L	D	T	A	C	W	A	K	N	F	D	Y	G	A	A	N	H	R	Q	I	G	N	G	P	M	L	V	L	S	D	K	S	L	I
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		T	L	E	L	A	R	V	M	S	K	L	K	T	D	T	E	L	R	F	I	T	F	G	A	E	E	N	G	L	I	G	S	K	K	Y	A	A	S	L	S	E	D	E	I	K	R	T	I	G	M	F	Q	L	D	.	.	.	.	.	.	.	.	.	.	M	V	G	S	K	D	A	G	D	L	I	M	Y	T	I	D
Template Known Secondary structure										T	T	S			S	S								S	S	S	T	T	T	S								T	T																	.	.	.	.	.	.	.	.	.	.	S			B	T	T	S								T	T
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.											.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310				.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.					.	.	.
Query SS confidence																																																							.	.					.	.	.
Query Sequence		A	P	P	K	L	T	A	W	V	E	T	V	A	A	E	I	G	V	P	L	Q	A	D	M	F	S	N	G	G	T	D	G	G	A	V	H	L	T	G	T	G	V	P	T	V	V	M	G	P	A	T	R	H	.	.	G	H	C	A	.	.	.	A	S	I	A	D	C	R	D	I	L	Q	M	Q	Q	L	L	S	A
Query Conservation																																																							.	.					.	.	.
Alig confidence																											.													.	.														.	.					.	.	.
Template Conservation																											.													.	.
Template Sequence		G	K	K	N	R	V	T	D	L	G	A	A	A	S	S	R	L	S	G	V	L	P	Y	G	Q	.	E	G	R	S	D	H	E	S	F	H	A	L	.	.	G	I	P	A	A	L	F	I	H	A	P	V	E	P	W	Y	H	T	P	N	D	T	L	D	K	I	S	K	E	K	L	D	N	V	A	D	I	V	G	S
Template Known Secondary structure		S																	T	S							.			S	S	T						T	T	.	.	T										S			T	T	T	T	S	T	T			G	G	G	B
Template Predicted Secondary structure																											.													.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		329	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	Q	R	L	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	Y	Q	A	A	R
Template Known Secondary structure								S
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions