Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 7 Aligned Residues 303 % Identity 23% Template c5mdhB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of ternary complex of porcine cytoplasmic malate2 dehydrogenase alpha-ketomalonate and tnad at 2.4 angstroms resolution Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																														.	.	.	.									.	.	.
Query SS confidence																														.	.	.	.									.	.	.
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	.	.	.	.	E	L	S	L	Y	D	I	A	.	.	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V
Query Conservation																														.	.	.	.									.	.	.
Alig confidence																														.	.	.	.									.	.	.
Template Conservation
Template Sequence		I	R	V	L	V	T	G	A	A	G	Q	I	A	Y	S	L	L	Y	S	I	G	N	G	S	V	F	G	K	D	Q	P	I	I	L	V	L	L	D	I	T	P	M	M	G	V	L	D	G	V	L	M	E	L	Q	D	C	A	L	P	L	L	K	D	V	I	A	T	D	K	E	E	I	A	F	K	D	L	D	V	A
Template Known Secondary structure								S	T	T	S	T											T	T	T	T	T		T	T											G	G	G														T			T	T								S						T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		L	I	S	A	G	V	A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	.	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	V	T	T	L	D	I	I
Query Conservation																																										.
Alig confidence																																										.																.	.	.
Template Conservation																																																										.	.	.
Template Sequence		I	L	V	G	S	M	P	R	R	D	G	M	E	R	K	D	L	L	K	A	N	V	K	I	F	K	C	Q	G	A	A	L	D	K	Y	A	K	K	S	V	K	V	I	V	V	G	N	P	A	N	T	N	C	L	T	A	.	.	.	S	K	S	A	P	S	I	P	K	E	N	F	S	C	L	T	R	L	D	H	N
Template Known Secondary structure						S					S	S	S		S		T	T																			S		T	T							S	S	S									.	.	.			T		T	T	S		G	G	G
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.											.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																								.														.										.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.														.										.	.	.	.	.	.	.	.	.	.
Query Sequence		R	S	N	T	F	V	A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	.	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	F	T	E	.	.	.	.	.	.	.	.	.	.	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G
Query Conservation																								.														.										.	.	.	.	.	.	.	.	.	.
Alig confidence																								.														.										.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																																																																															.	.
Template Sequence		R	A	K	A	Q	I	A	L	K	L	G	V	T	S	D	D	V	K	N	V	I	I	W	G	N	H	S	S	T	Q	Y	P	D	V	N	H	A	K	V	K	L	Q	A	K	E	V	G	V	Y	E	A	V	K	D	D	S	W	L	K	G	E	F	I	T	T	V	Q	Q	R	G	A	A	V	I	K	A	R	.	.	K
Template Known Secondary structure												T			G	G	G								B		S	S	T	T						T	T						T	T																	T																		.	.	S
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.					.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																								.					.	.	.	.
Query SS confidence																																								.					.	.	.	.
Query Sequence		G	S	A	T	L	S	M	G	Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	.	Q	Y	A	R	.	.	.	.	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M
Query Conservation																																								.					.	.	.	.
Alig confidence																							.	.																.					.	.	.	.																				.
Template Conservation																							.	.																																												.
Template Sequence		L	S	S	A	M	S	A	A	K	A	I	C	D	H	V	R	D	I	W	F	G	.	.	T	P	E	G	E	F	V	S	M	G	I	I	S	D	G	N	S	Y	G	V	P	D	D	L	L	Y	S	F	P	V	T	I	K	D	K	T	W	K	I	V	E	G	L	.	P	I	N	D	F	S	R	E	K	M	D	L	T
Template Known Secondary structure		S																					.	.			T	T										T	T		S	S	S			S	S											T	T									.
Template Predicted Secondary structure																							.	.																																												.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	T	L	K	K	D	I	A	L	G	E	E	F	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	E	L	A	E	E	K	E	T	A	F	E	F	L	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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