Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 31 Aligned Residues 284 % Identity 25% Template c3pqeD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:l-lactate dehydrogenase; PDBTitle: crystal structure of l-lactate dehydrogenase from bacillus subtilis2 with h171c mutation Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V
Query Conservation																																						.
Alig confidence									.																.													.																																										.	.
Template Conservation									.																.																																																							.	.
Template Sequence		N	K	V	A	L	I	G	.	A	G	F	V	G	S	S	Y	A	F	A	L	I	N	Q	.	G	I	T	D	E	L	V	V	I	D	V	N	K	E	K	A	M	G	D	V	M	D	L	N	H	G	K	A	F	A	P	Q	P	V	K	T	S	Y	G	T	Y	E	D	C	K	D	A	D	I	V	C	I	C	A	.	.
Template Known Secondary structure									.		S														.	T			S							S	S														T	G	G	G	S	S	S									G	G	G	G	T	T		S							.	.
Template Predicted Secondary structure									.																.																																																							.	.
Template SS confidence
		6	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V
Query Conservation																																																																				.
Alig confidence		.	.	.	.																																															.	.	.	.													.
Template Conservation		.	.	.	.																																															.	.	.	.
Template Sequence		.	.	.	.	G	A	N	R	L	E	L	V	E	K	N	L	K	I	F	K	G	I	V	S	E	V	M	A	S	G	F	D	G	I	F	L	V	A	T	N	P	V	D	I	L	T	Y	A	T	W	.	.	.	.	K	F	S	G	L	P	K	E	R	V	I	G	S	G	T	T	L	D	S	A	R	F	R	F	M	L
Template Known Secondary structure		.	.	.	.	S				T	T																		T	T	T			S						S	S	S										.	.	.	.							G	G	G					T	T
Template Predicted Secondary structure		.	.	.	.																																															.	.	.	.
Template SS confidence
						82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.										.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.					.	.	.	.	.	.	.	.	.
Query SS confidence																															.					.	.	.	.	.	.	.	.	.
Query Sequence		A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	.	.	.	.	.	.	.	.	.	V	S	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M	G
Query Conservation																															.					.	.	.	.	.	.	.	.	.
Alig confidence																															.					.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		S	E	Y	F	G	A	A	P	Q	N	V	C	A	H	I	I	G	E	H	G	D	T	E	L	P	V	W	S	H	A	N	V	G	G	V	P	V	S	E	L	V	E	K	N	D	Y	K	Q	E	E	L	D	Q	I	V	D	D	V	K	N	A	A	Y	H	I	I	E	K	K	.	.	.	G	A	T	Y	Y	G	V	A
Template Known Secondary structure			T	T	T	T	S		G	G	G							B	S	S	S	T	T					G	G	G				T	T																																				.	.	.	S
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	A	.	.	.	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D	I	A
Query Conservation																																			.	.	.
Alig confidence													.	.	.	.																			.	.	.																					.
Template Conservation													.	.	.	.																																										.
Template Sequence		M	S	L	A	R	I	T	K	A	I	L	.	.	.	.	H	N	E	N	S	I	L	T	V	S	T	Y	L	D	G	Q	Y	G	A	D	D	V	Y	I	G	V	P	A	V	V	N	R	G	G	I	A	G	I	T	E	L	.	N	L	N	E	K	E	K	E	Q	F	L	H	S	A	G	V	L	K	N	I	L	K
Template Known Secondary structure													.	.	.	.	T	T													S	T	T	S														T	T									.																						G
Template Predicted Secondary structure													.	.	.	.																																										.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions