Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 28 Aligned Residues 292 % Identity 27% Template c3gviB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of lactate/malate dehydrogenase from2 brucella melitensis in complex with adp Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																									.
Query SS confidence																																					.																									.
Query Sequence		K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	.	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V
Query Conservation																																					.																									.
Alig confidence								.																	.	.											.																									.
Template Conservation								.																	.	.
Template Sequence		K	I	A	L	I	G	.	S	G	M	I	G	G	T	L	A	H	L	A	G	L	K	E	.	.	L	G	D	V	V	L	F	D	I	A	E	G	T	P	Q	G	K	G	L	D	I	A	E	S	S	P	V	D	G	F	D	A	K	F	T	G	A	N	D	Y	A	A	I	E	G	A	D	V	V	I	V	T	A	G	V
Template Known Secondary structure								.		S													T	T	.	.									S	S	S	S																	T									S	S	G	G	G	G	T	T		S							S
Template Predicted Secondary structure								.																	.	.
Template SS confidence
		5	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V
Query Conservation																																																																				.
Alig confidence						.	.	.	.	.																																										.	.	.	.													.
Template Conservation						.	.	.	.	.																																										.	.	.	.
Template Sequence		P	R	K	D	.	.	.	.	.	D	L	L	G	I	N	L	K	V	M	E	Q	V	G	A	G	I	K	K	Y	A	P	E	A	F	V	I	C	I	T	N	P	L	D	A	M	V	W	A	L	Q	.	.	.	.	K	F	S	G	L	P	A	H	K	V	V	G	M	A	G	V	L	D	S	A	R	F	R	Y	F	L
Template Known Secondary structure						.	.	.	.	.																						T	T								S	S										.	.	.	.							G	G	G
Template Predicted Secondary structure						.	.	.	.	.																																										.	.	.	.
Template SS confidence
		82	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.										.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.							.	.	.	.	.	.	.	.	.
Query SS confidence																															.							.	.	.	.	.	.	.	.	.
Query Sequence		A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	.	.	.	.	.	.	.	.	.	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M	G
Query Conservation																															.							.	.	.	.	.	.	.	.	.
Alig confidence																															.							.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																							.
Template Sequence		S	E	E	F	N	V	S	V	E	D	V	T	V	F	V	L	G	G	H	G	D	S	M	V	P	L	A	R	Y	S	T	V	A	G	I	P	L	P	D	L	V	K	M	G	W	T	S	Q	D	K	L	D	K	I	I	Q	R	T	R	D	G	G	A	E	I	V	G	L	L	.	K	T	G	S	A	F	Y	A	P	A
Template Known Secondary structure						T			G	G	G									S	G	G	G					G	G	G				T	T									T	T	S	S														T										.	S	S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	A	.	.	.	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D	I	A	L
Query Conservation																																			.	.	.
Alig confidence													.	.	.	.																			.	.	.																					.
Template Conservation													.	.	.	.																																										.
Template Sequence		A	S	A	I	Q	M	A	E	S	Y	L	.	.	.	.	K	D	K	K	R	V	L	P	V	A	A	Q	L	S	G	Q	Y	G	V	K	D	M	Y	V	G	V	P	T	V	I	G	A	N	G	V	E	R	I	I	E	I	.	D	L	D	K	D	E	K	A	Q	F	D	K	S	V	A	S	V	A	G	L	C	E	A
Template Known Secondary structure													.	.	.	.	T	T													S	G	G	G														T	T									.
Template Predicted Secondary structure													.	.	.	.																																										.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		306	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	E	F	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	I	G	I	A	P
Template Known Secondary structure							G
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions