Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 36 Aligned Residues 289 % Identity 23% Template c3fi9B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from porphyromonas2 gingivalis Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V
Query Conservation																																						.
Alig confidence																									.													.																				.																							.
Template Conservation																									.																																	.																							.
Template Sequence		E	K	L	T	I	V	G	A	A	G	M	I	G	S	N	M	A	Q	T	A	A	M	M	.	R	L	T	P	N	L	C	L	Y	D	P	F	A	V	G	L	E	G	V	A	E	E	I	R	H	C	G	F	E	G	L	N	.	L	T	F	T	S	D	I	K	E	A	L	T	D	A	K	Y	I	V	S	S	G	G	.
Template Known Secondary structure		S						S	T	T	S													T	.	T			S							S																		T	T			.					S							T	T										.
Template Predicted Secondary structure																									.																																	.																							.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	.	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	V	T	T	L	D	I	I	R	S	N	T	F	V
Query Conservation																																				.
Alig confidence		.	.	.	.	.	.																													.																	.	.	.	.
Template Conservation		.	.	.	.	.	.																																														.	.	.	.
Template Sequence		.	.	.	.	.	.	T	R	E	D	L	L	K	G	N	A	E	I	A	A	Q	L	G	K	D	I	K	S	Y	C	P	D	C	K	H	V	I	I	I	F	N	P	A	D	I	T	G	L	V	T	L	.	.	.	.	I	Y	S	G	L	K	P	S	Q	V	T	T	L	A	G	L	D	S	T	R	L	Q	S	E	L
Template Known Secondary structure		.	.	.	.	.	.																									T	T								S	S	S										.	.	.	.				T			G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.																																														.	.	.	.
Template SS confidence
								91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		159	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.											190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.
Predicted Secondary structure													.																					.	.	.	.	.	.	.	.	.	.																																					.
Query SS confidence													.																					.	.	.	.	.	.	.	.	.	.																																					.
Query Sequence		A	E	L	K	G	K	Q	P	G	E	V	.	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	Q	V	.	.	.	.	.	.	.	.	.	.	P	G	V	S	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	.	S
Query Conservation													.																					.	.	.	.	.	.	.	.	.	.																																					.
Alig confidence													.																					.	.	.	.	.	.	.	.	.	.																													.	.	.						.
Template Conservation																																																																								.	.	.
Template Sequence		A	K	H	F	G	I	K	Q	S	L	V	T	N	T	R	T	Y	G	G	H	G	E	Q	M	A	V	F	A	S	T	A	K	V	N	G	T	P	L	T	D	L	I	G	T	D	K	L	T	N	E	Q	W	A	E	L	K	Q	R	V	V	K	G	G	A	N	I	I	K	L	R	.	.	.	G	R	S	S	F	Q	S
Template Known Secondary structure						T	S		G	G	G									S	S	G	G	G					G	G	G				T	T			G	G	G	T	T	T	B	T	T	B														T										.	.	.	S	S
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		M	G	Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	.	.	G	Q	Y	A	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D	I	A
Query Conservation																																	.	.
Alig confidence															.	.	.	.															.	.
Template Conservation															.	.	.	.
Template Sequence		P	S	Y	V	S	I	E	M	I	R	A	A	M	.	.	.	.	G	G	E	A	F	R	W	P	A	G	C	Y	V	N	V	P	G	F	E	H	I	M	M	A	M	E	T	T	I	T	K	D	G	V	K	H	S	D	I	N	Q	L	G	N	E	A	E	R	A	A	L	K	E	S	Y	S	H	L	A	K	L	R	D
Template Known Secondary structure														T	.	.	.	.	T	S	S		B		S									T	T									S					T	T							G	G	G	S	S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		305	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	E	E	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	I	A	M
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions