Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 40 Aligned Residues 294 % Identity 19% Template c3fefB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:putative glucosidase lpld; PDBTitle: crystal structure of putative glucosidase lpld from2 bacillus subtilis Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.																			.
Query SS confidence																				.	.																			.
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	.	.	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A
Query Conservation																				.	.																			.
Alig confidence									.											.	.																			.															.
Template Conservation									.																																														.
Template Sequence		I	K	I	A	Y	I	G	.	G	G	S	Q	G	W	A	R	S	L	X	S	D	L	S	I	D	E	R	X	S	G	T	V	A	L	Y	D	L	D	F	E	A	A	Q	K	N	E	V	I	G	N	H	S	G	.	N	G	R	W	R	Y	E	A	V	S	T	L	K	K	A	L	S	A	A	D	I	V	I	I	S	I
Template Known Secondary structure								T	.	T	T		S	S													T	T										S	S												T	T	S	S	.	S	S	S							S	S						T	T		S
Template Predicted Secondary structure									.																																														.
Template SS confidence
		10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.																							.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	A	R	K	P	G	M	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.
Template Conservation																																																																												.	.	.	.
Template Sequence		L	P	G	S	L	D	D	X	E	V	D	V	H	L	P	E	R	C	G	I	Y	Q	S	V	G	D	T	V	G	P	G	G	I	I	R	G	L	R	A	V	P	I	F	A	E	I	A	R	A	I	R	D	Y	A	P	E	S	W	V	I	N	Y	T	N	P	X	S	V	C	T	R	V	L	Y	.	.	.	.	K	V
Template Known Secondary structure			S	S											G	G	G	G	G	T				S	S		S	S	S																											T	T	S							S	S										.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.					.	.
		136	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.
Predicted Secondary structure												.																																											.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																																											.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V	A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.																																											.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																																											.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	P	G	I	K	A	I	G	C	C	H	E	V	F	G	T	Q	K	L	L	A	E	X	V	T	E	R	L	G	I	E	V	P	R	R	E	D	I	R	V	N	V	L	G	I	N	H	F	T	W	I	T	K	A	S	Y	R	H	I	D	L	L	P	I	F	R	E	F	S	A	H	Y	G	E	S	G	Y	E	L	E
Template Known Secondary structure		S	T	T								S																						S		G	G	G									T	T										T	T			S												T	T	T					T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
																																																									195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																																																																																.	.
Template Sequence		G	E	C	W	R	D	S	V	F	C	S	A	H	R	V	A	F	D	L	F	E	T	Y	G	A	I	P	A	A	G	D	R	H	L	A	E	F	L	P	G	P	Y	L	K	Q	P	E	V	W	K	F	H	L	T	P	I	S	F	R	K	Q	D	R	A	E	K	R	Q	E	T	E	R	L	I	V	Q	Q	R	.	.
Template Known Secondary structure		T			G	G	G		T	T				S											S	S				S						T	T	S	S		S	S	G	G	G						T																										T	T		.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.						.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.
Query SS confidence																																									.	.	.	.	.
Query Sequence		G	G	S	A	T	L	S	M	G	Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	.	.	.	.	.	Q	Y	A	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G
Query Conservation																																									.	.	.	.	.
Alig confidence		.																				.	.	.	.																.	.	.	.	.																				.
Template Conservation		.																				.	.	.	.																																								.
Template Sequence		.	G	V	A	E	K	A	S	G	E	E	G	V	N	I	I	A	A	L	L	.	.	.	.	G	L	G	E	L	V	T	N	V	N	X	P	N	Q	G	Q	V	L	N	L	P	I	Q	A	I	V	E	T	N	A	F	I	T	R	N	R	V	Q	P	.	I	L	S	G	A	L	P	K	G	V	E	X	L	A	A	R
Template Known Secondary structure		.				S	S			S												.	.	.	.	T	S	S											S	S	S	S	T	T	S		T	T	S										T	T					.
Template Predicted Secondary structure		.																				.	.	.	.																																								.
Template SS confidence
			322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340					.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	D	T	L	K	K	D	I	A	L	G	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	I	S	N	Q	E	A	V	A	D	A	G	L	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions