Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 24 Aligned Residues 272 % Identity 23% Template c3dl2A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 variant 3; PDBTitle: hexagonal structure of the ldh domain of human ubiquitin-2 conjugating enzyme e2-like isoform a Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V	A
Query Conservation
Alig confidence									.																.																													.	.	.	.																							.	.
Template Conservation									.																.																													.	.	.	.																							.	.
Template Sequence		N	K	I	T	V	V	G	.	G	G	E	L	G	I	A	C	T	L	A	I	S	A	K	.	G	I	A	D	R	L	V	L	L	D	L	S	E	G	T	K	G	A	T	M	D	L	E	I	F	N	L	P	.	.	.	.	N	V	E	I	S	K	D	L	S	A	S	A	H	S	K	V	V	I	F	T	V	N	.	.
Template Known Secondary structure									.		S														.	T			S								S		G	G	G		T	T							T		T	.	.	.	.	T					S		G	G	G	G	T	T		S								.	.
Template Predicted Secondary structure									.																.																													.	.	.	.																							.	.
Template SS confidence
		183	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.					.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V	A
Query Conservation																																																																			.
Alig confidence		.	.	.																																															.	.	.	.													.
Template Conservation		.	.	.																																															.	.	.	.
Template Sequence		.	.	.	S	Q	S	Y	L	D	V	V	Q	S	N	V	D	M	F	R	A	L	V	P	A	L	G	H	Y	S	Q	H	S	V	L	L	V	A	S	Q	P	V	E	I	M	T	Y	V	T	W	.	.	.	.	K	L	S	T	F	P	A	N	R	V	I	G	I	G	C	N	L	D	S	Q	R	L	Q	Y	I	I	T
Template Known Secondary structure		.	.	.																	T	T								S	T	T							S	S	S										.	.	.	.				T			G	G	G					T	T
Template Predicted Secondary structure		.	.	.																																															.	.	.	.
Template SS confidence
					255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300					.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M	G	Q	A	A	A	R	F	G	L	S	L
Query Conservation																														.
Alig confidence																														.					.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		N	V	L	K	A	Q	T	S	G	K	E	V	W	V	I	G	E	Q	G	E	D	K	V	L	T	W	S	G	E	E	V	V	S	.	.	.	.	.	.	.	.	H	T	S	Q	V	Q	L	S	N	R	A	M	E	L	L	R	V	K	.	.	.	G	Q	R	S	W	S	V	G	L	S	V	A	D	M	V	D	S	I
Template Known Secondary structure		T	T	S						S							B	S		S	S	S													.	.	.	.	.	.	.	.																	T		.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.									.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.				.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																									.	.	.	.
Query SS confidence																									.	.	.	.
Query Sequence		V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	A	.	.	.	.	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D	I	A
Query Conservation																									.	.	.	.
Alig confidence			.	.	.	.																			.	.	.	.																					.					.
Template Conservation			.	.	.	.																																											.					.
Template Sequence		V	.	.	.	.	N	N	K	K	K	V	H	S	V	S	A	L	A	K	G	Y	Y	D	I	N	S	E	V	F	L	S	L	P	C	I	L	G	T	N	G	V	S	E	V	I	K	T	.	T	L	D	T	.	V	T	E	K	L	Q	S	S	A	S	S	I	H	S	L	Q	Q
Template Known Secondary structure			.	.	.	.	T	T												T	T	S	T	T			S												T	T									.					.
Template Predicted Secondary structure			.	.	.	.																																											.					.
Template SS confidence
		402					.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.		.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions