Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 16 Aligned Residues 289 % Identity 25% Template c3d0oA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase 1; PDBTitle: crystal structure of lactate dehydrogenase from2 staphylococcus aureus Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V	A
Query Conservation																																					.
Alig confidence								.																.													.
Template Conservation								.																.
Template Sequence		K	V	V	L	I	G	.	N	G	A	V	G	S	S	Y	A	F	S	L	V	N	Q	.	S	I	V	D	E	L	V	I	I	D	L	D	T	E	K	V	R	G	D	V	M	D	L	K	H	A	T	P	Y	S	P	T	T	V	R	V	K	A	G	E	Y	S	D	C	H	D	A	D	L	V	V	I	C	A	G	A	A
Template Known Secondary structure								.		S														.		S		S							S																G	G	G	S	S	S									G	G	G	G	T	T		S
Template Predicted Secondary structure								.																.
Template SS confidence
		8	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V	A
Query Conservation																																																																			.
Alig confidence																																																			.	.	.	.													.
Template Conservation																																																			.	.	.	.
Template Sequence		Q	K	P	G	E	T	R	L	D	L	V	S	K	N	L	K	I	F	K	S	I	V	G	E	V	M	A	S	K	F	D	G	I	F	L	V	A	T	N	P	V	D	I	L	A	Y	A	T	W	.	.	.	.	K	F	S	G	L	P	K	E	R	V	I	G	S	G	T	I	L	D	S	A	R	F	R	L	L	L	S
Template Known Secondary structure				T	T																								T	T			S						S	S	S										.	.	.	.							G	G	G					T	T
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.										.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.					.	.	.	.	.	.	.	.	.
Query SS confidence																														.					.	.	.	.	.	.	.	.	.
Query Sequence		E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	.	.	.	.	.	.	.	.	.	V	S	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M	G	Q
Query Conservation																														.					.	.	.	.	.	.	.	.	.
Alig confidence																														.					.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		E	A	F	D	V	A	P	R	S	V	D	A	Q	I	I	G	E	H	G	D	T	E	L	P	V	W	S	H	A	N	I	A	G	Q	P	L	K	T	L	L	E	Q	R	P	E	G	K	A	Q	I	E	Q	I	F	V	Q	T	R	D	A	A	Y	D	I	I	Q	A	K	.	.	.	G	A	T	Y	Y	G	V	A	M
Template Known Secondary structure					T	S		G	G	G		B					B		S	S	T	T					T	T	T				T	T									T	S	T	T														T										.	.	.	S
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	.	.	.	A	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D	I	A
Query Conservation																																	.	.	.
Alig confidence												.	.	.	.																		.	.	.																						.
Template Conservation												.	.	.	.																																										.
Template Sequence		G	L	A	R	I	T	E	A	I	F	.	.	.	.	R	N	E	D	A	V	L	T	V	S	A	L	L	E	G	E	Y	E	E	E	D	V	Y	I	G	V	P	A	V	I	N	R	N	G	I	R	N	V	V	E	I	.	P	L	N	D	E	E	Q	S	K	F	A	H	S	A	K	T	L	K	D	I	M	A
Template Known Secondary structure												.	.	.	.	T	T													S	G	G	G														T	T									.
Template Predicted Secondary structure												.	.	.	.																																										.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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