Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 35 Aligned Residues 278 % Identity 26% Template c2v6bB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:l-lactate dehydrogenase; PDBTitle: crystal structure of lactate dehydrogenase from deinococcus2 radiodurans (apo form) Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V
Query Conservation																																						.
Alig confidence									.																.													.																		.																									.
Template Conservation									.																.																															.																									.
Template Sequence		M	K	V	G	V	V	G	.	T	G	F	V	G	S	T	A	A	F	A	L	V	L	R	.	G	S	C	S	E	L	V	L	V	D	R	D	E	D	R	A	Q	A	E	A	E	D	I	A	H	A	A	P	V	S	.	H	G	T	R	V	W	H	G	G	H	S	E	L	A	D	A	Q	V	V	I	L	T	A	G	.
Template Known Secondary structure									.		S														.	T			S							S	S													T	T			G	G	.	G									G	G	G	G	T	T		S								.
Template Predicted Secondary structure									.																.																															.																									.
Template SS confidence
		22	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V
Query Conservation																																																																				.
Alig confidence		.	.	.	.																																																	.	.	.	.	.	.									.
Template Conservation		.	.	.	.																																																	.	.	.	.	.	.
Template Sequence		.	.	.	.	A	E	S	R	L	D	L	L	E	K	N	A	D	I	F	R	E	L	V	P	Q	I	T	R	A	A	P	D	A	V	L	L	V	T	S	N	P	V	D	L	L	T	D	L	A	T	Q	L	.	.	.	.	.	.	A	P	G	Q	P	V	I	G	S	G	T	V	L	D	S	A	R	F	R	H	L	M
Template Known Secondary structure		.	.	.	.																											T	T	S						S	S	S												.	.	.	.	.	.		T	T	S						T	T
Template Predicted Secondary structure		.	.	.	.																																																	.	.	.	.	.	.
Template SS confidence
						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	Q	V	P	G	V	S	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M	G	Q	A	A	A	R	F	G	L	S	L
Query Conservation
Alig confidence																																																													.	.	.
Template Conservation																																																													.	.	.
Template Sequence		A	Q	H	A	G	V	D	G	T	H	A	H	G	Y	V	L	G	E	H	G	D	S	E	V	L	A	W	S	S	A	M	V	A	G	M	P	V	A	D	F	M	Q	A	Q	N	L	P	W	N	E	Q	V	R	A	K	I	D	E	G	.	.	.	T	R	T	Y	Y	G	I	G	A	A	L	A	R	I	T	E	A	V
Template Known Secondary structure						T	S		G	G	G							B	S	S	S	T	T					G	G	G				T	T										T	T				S											.	.	.
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	A	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K
Query Conservation
Alig confidence			.	.	.	.															.																								.
Template Conservation			.	.	.	.															.																								.
Template Sequence		L	.	.	.	.	R	D	R	R	A	V	L	T	V	S	A	P	T	P	.	E	Y	G	V	S	L	S	L	P	R	V	V	G	R	Q	G	V	L	S	T	L	H	P	.	K	L	T	G	D	E	Q	Q	K	L	E	Q	S	A	G	V	L	R	G
Template Known Secondary structure			.	.	.	.	T	T												T	.	T	T	T											T	T									.
Template Predicted Secondary structure			.	.	.	.															.																								.
Template SS confidence
		262					.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions